diff --git a/src/template_generation_tools.py b/src/template_generation_tools.py index 5f3960a8e..f74447b58 100644 --- a/src/template_generation_tools.py +++ b/src/template_generation_tools.py @@ -64,7 +64,7 @@ def generate_class_graph_template(ccf_tools_df :pd.DataFrame, log_dict: dict): 'OBO_Validated_surrounds': '>A CCFH:IN_OBO', 'validation_date_surrounds': '>A dc:date'} - seed_sub = {'ID': 'ID', 'in_subset': 'AI in_subset', 'present_in_taxon': 'AI present_in_taxon'} + seed_sub = {'ID': 'ID', 'in_subset': 'AI in_subset'} seed_no_valid = {'ID': 'ID', 'ccf_part_of': 'SC ccf_part_of some %', 'ccf_located_in': 'SC ccf_located_in some %'} image_report = [] ug = UberonGraph() @@ -120,13 +120,13 @@ def generate_class_graph_template(ccf_tools_df :pd.DataFrame, log_dict: dict): records.append({'ID': r['o'], 'User_label': r['user_olabel']}) if 'UBERON' in r['s']: - records_ub_sub.append({'ID': r['s'], 'present_in_taxon': 'NCBITaxon:9606', 'in_subset': 'human_reference_atlas'}) + records_ub_sub.append({'ID': r['s'], 'in_subset': 'human_reference_atlas'}) if 'UBERON' in r['o']: - records_ub_sub.append({'ID': r['o'], 'present_in_taxon': 'NCBITaxon:9606', 'in_subset': 'human_reference_atlas'}) + records_ub_sub.append({'ID': r['o'], 'in_subset': 'human_reference_atlas'}) if 'CL' in r['s'] and not 'PCL' in r['s']: - records_cl_sub.append({'ID': r['s'], 'present_in_taxon': 'NCBITaxon:9606', 'in_subset': 'human_reference_atlas'}) + records_cl_sub.append({'ID': r['s'], 'in_subset': 'human_reference_atlas'}) if 'CL' in r['o'] and not 'PCL' in r['o']: - records_cl_sub.append({'ID': r['o'], 'present_in_taxon': 'NCBITaxon:9606', 'in_subset': 'human_reference_atlas'}) + records_cl_sub.append({'ID': r['o'], 'in_subset': 'human_reference_atlas'}) if ('CL' in r['s'] or 'PCL' in r['s']) and 'UBERON' in r['o']: terms_ct_as.add(f"({r['s']} {r['o']})")