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Merged
yuanzhou merged 3 commits into from
Oct 24, 2025
Merged

Derek furst/debug configuration #947

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a029f26
Merge pull request #942 from hubmapconsortium/Derek-Furst/travis-to-g…
yuanzhou Sep 15, 2025
5e64a69
Update README.md
yuanzhou Sep 15, 2025
668c5ed
accompanying update to search-api to utlize the logging configuration…
DerekFurstPitt Oct 24, 2025
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3 changes: 0 additions & 3 deletions src/hubmap_translation/addl_index_transformations/portal/README.md
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Original file line number Diff line number Diff line change
@@ -1,5 +1,2 @@
This directory provides code that cleans and reorganizes HuBMAP documents
before they go to the `portal` Elasticsearch index.

(I would be very happy if there were tests and linting across this whole repo, but for now this directory is a kingdom unto itself.
There is `.travis.yml` at the top level, but otherwise this is self-contained.)
4 changes: 3 additions & 1 deletion src/instance/app.cfg.example
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Expand Up @@ -27,4 +27,6 @@ PARAM_SEARCH_RECOGNIZED_ENTITIES_BY_INDEX = {
,'files': {
'files': None
}
}
}

DEBUG_MODE = False
1 change: 1 addition & 0 deletions src/main.py
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Expand Up @@ -31,6 +31,7 @@
config['CONSORTIUM_ID'] = app.config['CONSORTIUM_ID']
config['PARAM_SEARCH_RECOGNIZED_ENTITIES_BY_INDEX'] = app.config['PARAM_SEARCH_RECOGNIZED_ENTITIES_BY_INDEX']
config['ONTOLOGY_API_BASE_URL'] = app.config['ONTOLOGY_API_BASE_URL'].strip('/')
config['DEBUG_MODE'] = app.config['DEBUG_MODE']

if not config['ONTOLOGY_API_BASE_URL']:
raise Exception(f"Unable retrieve ontology information using"
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