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Description
Summary
I'm building production neuroimaging pipelines that depend on datasets and would benefit greatly from two pending PRs being reviewed/merged.
Pending PRs
| PR | Description | Status | Open Since |
|---|---|---|---|
| #7886 | BIDS dataset loader | Open | Nov 29 |
| #7887 | Lazy loading for NIfTI | Open | Nov 29 |
Use Case
The neuroimaging community uses the BIDS (Brain Imaging Data Structure) standard for organizing MRI/fMRI data. These PRs would enable:
- feat(bids): Add BIDS dataset loader for neuroimaging data #7886:
load_dataset('bids', data_dir='/path/to/bids')- Load local BIDS directories directly - fix(nifti): enable lazy loading for Nifti1ImageWrapper #7887: Memory-efficient NIfTI handling (single 4D fMRI file can be 1-2GB)
Current Workaround
Without these, users must either:
- Upload to Hub first, then consume (works but slow iteration)
- Hand-roll BIDS parsing (duplicates effort)
Request
Could a maintainer review these PRs? Happy to address any feedback. The BIDS loader has tests passing and was end-to-end tested with real OpenNeuro data.
Thank you for the great work on Nifti() support - these PRs build on that foundation.
Related
- Contributes to Support scientific data formats #7804 (Support scientific data formats)
- Built on @TobiasPitters's Nifti feature work
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