paperpipe/pyproject.toml at main · hummat/paperpipe · GitHub

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[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[project]
name = "paperpipe"
version = "1.8.2"
description = "Unified paper database for coding agents + PaperQA2"
readme = "README.md"
license = "MIT"
requires-python = ">=3.10"
authors = [{ name = "Matthias Humt" }]
keywords = ["arxiv", "papers", "research", "llm", "coding-agent", "paperqa"]
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
]
dependencies = [
    "arxiv>=2.0.0",
    "click>=8.0.0",
    "requests>=2.28.0",
    "tomli>=2.0.0; python_version < '3.11'",
]

[project.optional-dependencies]
llm = ["litellm>=1.0.0"]
leann = ["leann-core>=0.3.5", "leann-backend-hnsw>=0.3.5"]
paperqa = [
    "paper-qa[docling,image,ldp,local,memory,nemotron,office,openreview,pymupdf,pypdf-enhanced,pypdf-media,qdrant,zotero]>=5.0.0; python_version >= '3.11'",
    "pymupdf4llm",
]
mcp = [
    "mcp>=1.0.0; python_version >= '3.11'",
    "paper-qa>=5.0.0; python_version >= '3.11'",
]
bibtex = ["bibtexparser>=1.4.0"]
figures = ["pymupdf>=1.24.0"]
all = ["paperpipe[llm,leann,paperqa,mcp,bibtex,figures]"]
dev = [
    "build>=1.0.0",
    "pyright>=1.1.385",
    "pytest-cov>=7.0.0",
    "ruff>=0.1.0",
    "twine>=5.0.0",
    # Optional deps for test coverage (mirrors [dependency-groups].dev)
    "bibtexparser>=1.4.0",
    "pymupdf>=1.24.0",
]

[dependency-groups]
dev = [
    "build>=1.0.0",
    "pyright>=1.1.385",
    "pytest>=7.0.0",
    "pytest-cov>=7.0.0",
    "ruff>=0.1.0",
    "twine>=5.0.0",
    # Optional deps needed for unit test coverage (not integration tests)
    "bibtexparser>=1.4.0",
    "pymupdf>=1.24.0",
]

[project.scripts]
papi = "paperpipe.cli:cli"
paperqa_mcp = "paperpipe.paperqa_mcp_server:main"

[project.urls]
Homepage = "https://github.com/hummat/paperpipe"
Documentation = "https://github.com/hummat/paperpipe#readme"
Repository = "https://github.com/hummat/paperpipe"

[tool.hatch.build.targets.wheel]
only-include = [
    "paperpipe",
    "README.md",
    "ROADMAP.md",
    "LICENSE",
    "AGENT_INTEGRATION.md",
    "skills",
]

[tool.hatch.build.targets.sdist]
only-include = [
    "paperpipe",
    "pyproject.toml",
    "README.md",
    "ROADMAP.md",
    "LICENSE",
    "AGENT_INTEGRATION.md",
    "skills",
]

[tool.pytest.ini_options]
pythonpath = ["tests"]
addopts = "--cov=paperpipe --cov-report=term-missing --cov-fail-under=75 -m 'not integration' -W ignore::DeprecationWarning:bibtexparser -W ignore::DeprecationWarning:pyparsing --cov-config=pyproject.toml"
markers = [
    "integration: marks tests as integration tests (may require network/external services)",
    "slow: marks tests as slow",
]
filterwarnings = [
    "ignore:open_text is deprecated.*:DeprecationWarning:litellm\\..*",
    "ignore:Pydantic serializer warnings:UserWarning:pydantic\\.main",
    "ignore:.*:DeprecationWarning:bibtexparser\\..*",
    "ignore:.*:DeprecationWarning:pyparsing\\..*",
]

[tool.coverage.run]
source = ["paperpipe"]
omit = ["test_*.py", "paperpipe/paperqa_mcp_server.py"]

[tool.coverage.report]
exclude_lines = ["if __name__ == .__main__.:", "pragma: no cover"]

[tool.ruff]
line-length = 120
target-version = "py310"

[tool.ruff.lint]
select = ["E", "F", "I", "W"]
ignore = ["E501"]

[tool.pyright]
include = ["paperpipe", "tests"]
exclude = [
    "__pycache__",
    ".git",
    ".venv",
    "build",
    "dist",
    ".pytest_cache",
    ".ruff_cache",
]
pythonVersion = "3.10"
typeCheckingMode = "basic"
reportMissingImports = "warning"
reportMissingModuleSource = "warning"
reportMissingTypeStubs = "none"
venvPath = "."
venv = ".venv"