update workflow

Author: yifanfeng97

.github/workflows/quality.yml

@@ -23,6 +23,8 @@ jobs:
       uses: astral-sh/setup-uv@v5
       with:
         version: "latest"
+        enable-cache: true
+        cache-dependency-glob: "**/uv.lock"
 
     - name: Set up Python
       run: uv python install 3.11
@@ -43,42 +45,9 @@ jobs:
       run: uv run mypy hyperdb/ --ignore-missing-imports
 
     - name: Security check with bandit
-      run: uv run bandit -r hyperdb/ -f json -o bandit-report.json
+      run: uv run bandit -r hyperdb/ --severity-level medium
       continue-on-error: true
 
-    - name: Upload bandit report
-      uses: actions/upload-artifact@v4
-      if: always()
-      with:
-        name: bandit-report
-        path: bandit-report.json
-
-  dependency-check:
-    name: Dependency vulnerability check
-    runs-on: ubuntu-latest
-    
-    steps:
-    - name: Checkout code
-      uses: actions/checkout@v4
-    
-    - name: Install uv
-      uses: astral-sh/setup-uv@v5
-      with:
-        version: "latest"
-    
-    - name: Set up Python
-      run: uv python install 3.11
-    
-    - name: Install dependencies
-      run: uv sync --group dev
-    
     - name: Run safety check
-      run: uv run safety check --json --output safety-report.json
+      run: uv run safety check
       continue-on-error: true
-    
-    - name: Upload safety report
-      uses: actions/upload-artifact@v4
-      if: always()
-      with:
-        name: safety-report
-        path: safety-report.json

hyperdb/__init__.py

@@ -1,8 +1,7 @@
+from ._global import AUTHOR_EMAIL
 from .base import BaseHypergraphDB
 from .hypergraph import HypergraphDB
 
-from ._global import AUTHOR_EMAIL
-
 __version__ = "0.2.0"
 
 __all__ = {"AUTHOR_EMAIL", "BaseHypergraphDB", "HypergraphDB"}

hyperdb/base.py

@@ -1,7 +1,7 @@
-from pathlib import Path
 from dataclasses import dataclass, field
 from functools import cached_property
-from typing import Union, Tuple, List, Set, Dict, Any, Optional
+from pathlib import Path
+from typing import Any, Dict, List, Optional, Set, Tuple, Union
 
 
 @dataclass
@@ -99,14 +99,14 @@ def all_e(self) -> List[Tuple]:
         Return a list of all hyperedges in the hypergraph.
         """
         raise NotImplementedError
-    
+
     @cached_property
     def num_v(self) -> int:
         r"""
         Return the number of vertices in the hypergraph.
         """
         raise NotImplementedError
-    
+
     @cached_property
     def num_e(self) -> int:
         r"""
@@ -283,24 +283,19 @@ def stats(self) -> dict:
         Return basic statistics of the hypergraph.
         """
         raise NotImplementedError
-    
+
     def draw(self, port: int = 8080, open_browser: bool = True, blocking: bool = True):
         """
         Draw the hypergraph data of the current HyperDB instance
-        
-        Args:  
-            ``port``: Server port number, defaults to 8080  
+
+        Args:
+            ``port``: Server port number, defaults to 8080
             ``open_browser``: Whether to automatically open the browser, defaults to True
             ``blocking``: Whether to block the main thread, defaults to True. Set to False for non-blocking mode.
 
         Returns:
             HypergraphViewer instance
         """
         from .draw import draw_hypergraph
-        
-        return draw_hypergraph(
-            hypergraph_db=self,
-            port=port,
-            open_browser=open_browser,
-            blocking=blocking
-        )
+
+        return draw_hypergraph(hypergraph_db=self, port=port, open_browser=open_browser, blocking=blocking)