Merge branch 'main' of github.com:idekerlab/cellmaps_image_embedding

Author: coleslaw481

docs/outputs.rst

@@ -9,9 +9,27 @@ Below is the list and description of each output generated by the tool.
 - ``image_emd.tsv``:
     A tab-separated file containing the generated embeddings for each image. Each row corresponds to an image and the subsequent columns contain the embedding vector.
 
+.. code-block::
+
+            1	2	3	4
+    BPTF	-0.037030112	-0.139459819	0.417184144	0.386600941
+    KAT2B	0.02969132	-0.139459819	-0.038685802	0.136547908
+    PARP1	-0.037030112	-0.139459819	0.540370524	0.119614214
+    MSL1	0.18169874	-0.139459819	-0.038685802	0.152157351
+    KAT6B	-0.037030112	-0.139459819	0.308141887	0.257056117
+
 - ``labels_prob.tsv``:
     This tab-separated file contains probability scores for each of the 28 possible protein labels (e.g., Nucleoplasm, N. membrane, etc.) for each image.
 
+.. code-block::
+
+        Nucleoplasm	N. membrane	Nucleoli	N. fibrillar c.
+    BPTF	0.740698278	0.270941526	0.147179633	0.149313971
+    KAT2B	0.38626197	0.092356719	0.36738047	0.238842875
+    PARP1	0.596435964	0.100168504	0.382214785	0.179471999
+    MSL1	0.195862561	0.01370267	0.101418771	0.038516384
+    KAT6B	0.606423676	0.101763181	0.337655455	0.201311186
+
 - ``model.pth``:
     The pre-trained Densenet model used for image embedding.