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Update package versions
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requirements.txt

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scipy<1.13.0
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cellmaps_utils==0.8.0
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cellmaps_utils==0.9.0
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cellmaps_imagedownloader==0.3.0
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cellmaps_ppidownloader==0.2.2
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cellmaps_image_embedding==0.3.2
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cellmaps_ppi_embedding==0.4.2
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cellmaps_coembedding==1.2.2
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cellmaps_image_embedding==0.3.3
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cellmaps_ppi_embedding==0.4.3
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cellmaps_coembedding==1.3.1
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cellmaps_generate_hierarchy==0.2.4
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cellmaps_hierarchyeval==0.2.2
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networkx>=2.8,<2.9

setup.py

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history = history_file.read()
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requirements = ['scipy<1.13.0',
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'cellmaps_utils==0.8.0',
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'cellmaps_utils==0.9.0',
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'cellmaps_imagedownloader == 0.3.0',
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'cellmaps_ppidownloader == 0.2.2',
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'cellmaps_image_embedding == 0.3.2',
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'cellmaps_ppi_embedding == 0.4.2',
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'cellmaps_coembedding == 1.2.2',
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'cellmaps_image_embedding == 0.3.3',
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'cellmaps_ppi_embedding == 0.4.3',
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'cellmaps_coembedding == 1.3.1',
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'cellmaps_generate_hierarchy == 0.2.4',
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'cellmaps_hierarchyeval == 0.2.2',
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'networkx>=2.8,<2.9',

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