Skip to content

Commit cc23611

Browse files
author
Registry Bot
committed
Update repository from live dataset
1 parent f23088f commit cc23611

File tree

6 files changed

+94
-94
lines changed

6 files changed

+94
-94
lines changed

registry-data/full.json

Lines changed: 47 additions & 47 deletions
Original file line numberDiff line numberDiff line change
@@ -24087,14 +24087,14 @@
2408724087
},
2408824088
"mirId": "MIR:00100663",
2408924089
"name": "IMEx Consortium though Intact",
24090-
"official": false,
24090+
"official": true,
2409124091
"protectedUrls": false,
2409224092
"providerCode": "CURATOR_REVIEW",
2409324093
"renderDeprecatedLanding": false,
2409424094
"renderProtectedLanding": false,
2409524095
"resourceHomeUrl": "https://www.ebi.ac.uk/intact/",
2409624096
"sampleId": "IM-19210-3",
24097-
"urlPattern": "https://imexcentral.org/icentral/imex/rec/{$id}"
24097+
"urlPattern": "https://www.ebi.ac.uk/intact/search?query={$id}#interaction"
2409824098
}
2409924099
],
2410024100
"sampleId": "IM-19210-3",
@@ -34083,7 +34083,7 @@
3408334083
"renderProtectedLanding": false,
3408434084
"resourceHomeUrl": "http://nbn-resolving.org/resolve_urn.htm",
3408534085
"sampleId": "urn:nbn:fi:tkk-004781",
34086-
"urlPattern": "http://nbn-resolving.org/resolver?identifier={$id}&verb=redirect"
34086+
"urlPattern": "http://nbn-resolving.org/{$id}"
3408734087
}
3408834088
],
3408934089
"sampleId": "urn:nbn:fi:tkk-004781",
@@ -42527,41 +42527,6 @@
4252742527
"sampleId": "16333295",
4252842528
"urlPattern": "http://europepmc.org/abstract/MED/{$id}"
4252942529
},
42530-
{
42531-
"authHelpDescription": null,
42532-
"authHelpUrl": null,
42533-
"deprecated": false,
42534-
"deprecationDate": null,
42535-
"deprecationOfflineDate": null,
42536-
"deprecationStatement": null,
42537-
"description": "PubMed through Linkedlife data",
42538-
"id": 64,
42539-
"institution": {
42540-
"description": "Linked Life Data (LLD) is a data-as-a-service platform that provides access to 25 public biomedical databases through a single access point. The service allows writing of complex data analytical queries, answering complex bioinformatics questions such as 'give me all human genes located in Y-chromosome with the known molecular interactions'; simply navigate through the information, or export subsets like 'all approved drugs and their brand names'. ",
42541-
"homeUrl": "http://linkedlifedata.com/",
42542-
"id": 63,
42543-
"location": {
42544-
"countryCode": "BG",
42545-
"countryName": "Bulgaria"
42546-
},
42547-
"name": "Linkedlifedata, Ontotext, Sofia",
42548-
"rorId": null
42549-
},
42550-
"location": {
42551-
"countryCode": "BG",
42552-
"countryName": "Bulgaria"
42553-
},
42554-
"mirId": "MIR:00100745",
42555-
"name": "PubMed through Linkedlife data",
42556-
"official": false,
42557-
"protectedUrls": false,
42558-
"providerCode": "CURATOR_REVIEW",
42559-
"renderDeprecatedLanding": false,
42560-
"renderProtectedLanding": false,
42561-
"resourceHomeUrl": "http://linkedlifedata.com/",
42562-
"sampleId": "23735196",
42563-
"urlPattern": "http://linkedlifedata.com/resource/pubmed/id/{$id}"
42564-
},
4256542530
{
4256642531
"authHelpDescription": null,
4256742532
"authHelpUrl": null,
@@ -42666,6 +42631,41 @@
4266642631
"resourceHomeUrl": "https://scholia.toolforge.org/",
4266742632
"sampleId": "29029422",
4266842633
"urlPattern": "https://scholia.toolforge.org/pubmed/{$id}"
42634+
},
42635+
{
42636+
"authHelpDescription": null,
42637+
"authHelpUrl": null,
42638+
"deprecated": true,
42639+
"deprecationDate": "2025-04-28T09:17:05.836+00:00",
42640+
"deprecationOfflineDate": null,
42641+
"deprecationStatement": null,
42642+
"description": "PubMed through Linkedlife data",
42643+
"id": 64,
42644+
"institution": {
42645+
"description": "Linked Life Data (LLD) is a data-as-a-service platform that provides access to 25 public biomedical databases through a single access point. The service allows writing of complex data analytical queries, answering complex bioinformatics questions such as 'give me all human genes located in Y-chromosome with the known molecular interactions'; simply navigate through the information, or export subsets like 'all approved drugs and their brand names'. ",
42646+
"homeUrl": "http://linkedlifedata.com/",
42647+
"id": 63,
42648+
"location": {
42649+
"countryCode": "BG",
42650+
"countryName": "Bulgaria"
42651+
},
42652+
"name": "Linkedlifedata, Ontotext, Sofia",
42653+
"rorId": null
42654+
},
42655+
"location": {
42656+
"countryCode": "BG",
42657+
"countryName": "Bulgaria"
42658+
},
42659+
"mirId": "MIR:00100745",
42660+
"name": "PubMed through Linkedlife data",
42661+
"official": false,
42662+
"protectedUrls": false,
42663+
"providerCode": "CURATOR_REVIEW",
42664+
"renderDeprecatedLanding": false,
42665+
"renderProtectedLanding": false,
42666+
"resourceHomeUrl": "http://linkedlifedata.com/",
42667+
"sampleId": "23735196",
42668+
"urlPattern": "http://linkedlifedata.com/resource/pubmed/id/{$id}"
4266942669
}
4267042670
],
4267142671
"sampleId": "16333295",
@@ -48060,15 +48060,15 @@
4806048060
"description": "The Arabidopsis Information Resource (TAIR) Locus",
4806148061
"id": 185,
4806248062
"institution": {
48063-
"description": "CURATOR_REVIEW",
48064-
"homeUrl": "CURATOR_REVIEW",
48065-
"id": 180,
48063+
"description": "Grant-funded research data repositories and tools risk termination when grants end, resulting in lost data, resources and expertise. We work with the creators of these resources to develop innovative and sustainable funding support, ensuring that valuable scientific data and software resources survive and prosper.\n",
48064+
"homeUrl": "https://www.phoenixbioinformatics.org/",
48065+
"id": 3367,
4806648066
"location": {
4806748067
"countryCode": "US",
4806848068
"countryName": "United States"
4806948069
},
48070-
"name": "Carnegie Institution of Washington Department of Plant Biology and National Center for Genome Resources (NCGR)",
48071-
"rorId": null
48070+
"name": "Phoenix Bioinformatics",
48071+
"rorId": "https://ror.org/0018yg518"
4807248072
},
4807348073
"location": {
4807448074
"countryCode": "US",
@@ -48081,9 +48081,9 @@
4808148081
"providerCode": "CURATOR_REVIEW",
4808248082
"renderDeprecatedLanding": false,
4808348083
"renderProtectedLanding": false,
48084-
"resourceHomeUrl": "http://arabidopsis.org/index.jsp",
48084+
"resourceHomeUrl": "http://arabidopsis.org/",
4808548085
"sampleId": "2200950",
48086-
"urlPattern": "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:{$id}"
48086+
"urlPattern": "https://www.arabidopsis.org/locus?accession={$id}"
4808748087
}
4808848088
],
4808948089
"sampleId": "2200950",
@@ -48137,9 +48137,9 @@
4813748137
"providerCode": "tair",
4813848138
"renderDeprecatedLanding": false,
4813948139
"renderProtectedLanding": false,
48140-
"resourceHomeUrl": "https://www.arabidopsis.org/index.jsp",
48140+
"resourceHomeUrl": "https://www.arabidopsis.org/",
4814148141
"sampleId": "AT5G05330",
48142-
"urlPattern": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name={$id}"
48142+
"urlPattern": "https://www.arabidopsis.org/locus?name={$id}"
4814348143
}
4814448144
],
4814548145
"sampleId": "AT5G05330",

registry-data/namespaces/imex.json

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -76,14 +76,14 @@
7676
},
7777
"mirId": "MIR:00100663",
7878
"name": "IMEx Consortium though Intact",
79-
"official": false,
79+
"official": true,
8080
"protectedUrls": false,
8181
"providerCode": "CURATOR_REVIEW",
8282
"renderDeprecatedLanding": false,
8383
"renderProtectedLanding": false,
8484
"resourceHomeUrl": "https://www.ebi.ac.uk/intact/",
8585
"sampleId": "IM-19210-3",
86-
"urlPattern": "https://imexcentral.org/icentral/imex/rec/{$id}"
86+
"urlPattern": "https://www.ebi.ac.uk/intact/search?query={$id}#interaction"
8787
}
8888
],
8989
"sampleId": "IM-19210-3",

registry-data/namespaces/nbn.json

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -48,7 +48,7 @@
4848
"renderProtectedLanding": false,
4949
"resourceHomeUrl": "http://nbn-resolving.org/resolve_urn.htm",
5050
"sampleId": "urn:nbn:fi:tkk-004781",
51-
"urlPattern": "http://nbn-resolving.org/resolver?identifier={$id}&verb=redirect"
51+
"urlPattern": "http://nbn-resolving.org/{$id}"
5252
}
5353
],
5454
"sampleId": "urn:nbn:fi:tkk-004781",

registry-data/namespaces/pubmed.json

Lines changed: 35 additions & 35 deletions
Original file line numberDiff line numberDiff line change
@@ -50,41 +50,6 @@
5050
"sampleId": "16333295",
5151
"urlPattern": "http://europepmc.org/abstract/MED/{$id}"
5252
},
53-
{
54-
"authHelpDescription": null,
55-
"authHelpUrl": null,
56-
"deprecated": false,
57-
"deprecationDate": null,
58-
"deprecationOfflineDate": null,
59-
"deprecationStatement": null,
60-
"description": "PubMed through Linkedlife data",
61-
"id": 64,
62-
"institution": {
63-
"description": "Linked Life Data (LLD) is a data-as-a-service platform that provides access to 25 public biomedical databases through a single access point. The service allows writing of complex data analytical queries, answering complex bioinformatics questions such as 'give me all human genes located in Y-chromosome with the known molecular interactions'; simply navigate through the information, or export subsets like 'all approved drugs and their brand names'. ",
64-
"homeUrl": "http://linkedlifedata.com/",
65-
"id": 63,
66-
"location": {
67-
"countryCode": "BG",
68-
"countryName": "Bulgaria"
69-
},
70-
"name": "Linkedlifedata, Ontotext, Sofia",
71-
"rorId": null
72-
},
73-
"location": {
74-
"countryCode": "BG",
75-
"countryName": "Bulgaria"
76-
},
77-
"mirId": "MIR:00100745",
78-
"name": "PubMed through Linkedlife data",
79-
"official": false,
80-
"protectedUrls": false,
81-
"providerCode": "CURATOR_REVIEW",
82-
"renderDeprecatedLanding": false,
83-
"renderProtectedLanding": false,
84-
"resourceHomeUrl": "http://linkedlifedata.com/",
85-
"sampleId": "23735196",
86-
"urlPattern": "http://linkedlifedata.com/resource/pubmed/id/{$id}"
87-
},
8853
{
8954
"authHelpDescription": null,
9055
"authHelpUrl": null,
@@ -189,6 +154,41 @@
189154
"resourceHomeUrl": "https://scholia.toolforge.org/",
190155
"sampleId": "29029422",
191156
"urlPattern": "https://scholia.toolforge.org/pubmed/{$id}"
157+
},
158+
{
159+
"authHelpDescription": null,
160+
"authHelpUrl": null,
161+
"deprecated": true,
162+
"deprecationDate": "2025-04-28T09:17:05.836+00:00",
163+
"deprecationOfflineDate": null,
164+
"deprecationStatement": null,
165+
"description": "PubMed through Linkedlife data",
166+
"id": 64,
167+
"institution": {
168+
"description": "Linked Life Data (LLD) is a data-as-a-service platform that provides access to 25 public biomedical databases through a single access point. The service allows writing of complex data analytical queries, answering complex bioinformatics questions such as 'give me all human genes located in Y-chromosome with the known molecular interactions'; simply navigate through the information, or export subsets like 'all approved drugs and their brand names'. ",
169+
"homeUrl": "http://linkedlifedata.com/",
170+
"id": 63,
171+
"location": {
172+
"countryCode": "BG",
173+
"countryName": "Bulgaria"
174+
},
175+
"name": "Linkedlifedata, Ontotext, Sofia",
176+
"rorId": null
177+
},
178+
"location": {
179+
"countryCode": "BG",
180+
"countryName": "Bulgaria"
181+
},
182+
"mirId": "MIR:00100745",
183+
"name": "PubMed through Linkedlife data",
184+
"official": false,
185+
"protectedUrls": false,
186+
"providerCode": "CURATOR_REVIEW",
187+
"renderDeprecatedLanding": false,
188+
"renderProtectedLanding": false,
189+
"resourceHomeUrl": "http://linkedlifedata.com/",
190+
"sampleId": "23735196",
191+
"urlPattern": "http://linkedlifedata.com/resource/pubmed/id/{$id}"
192192
}
193193
],
194194
"sampleId": "16333295",

registry-data/namespaces/tair.locus.json

Lines changed: 7 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -25,15 +25,15 @@
2525
"description": "The Arabidopsis Information Resource (TAIR) Locus",
2626
"id": 185,
2727
"institution": {
28-
"description": "CURATOR_REVIEW",
29-
"homeUrl": "CURATOR_REVIEW",
30-
"id": 180,
28+
"description": "Grant-funded research data repositories and tools risk termination when grants end, resulting in lost data, resources and expertise. We work with the creators of these resources to develop innovative and sustainable funding support, ensuring that valuable scientific data and software resources survive and prosper.\n",
29+
"homeUrl": "https://www.phoenixbioinformatics.org/",
30+
"id": 3367,
3131
"location": {
3232
"countryCode": "US",
3333
"countryName": "United States"
3434
},
35-
"name": "Carnegie Institution of Washington Department of Plant Biology and National Center for Genome Resources (NCGR)",
36-
"rorId": null
35+
"name": "Phoenix Bioinformatics",
36+
"rorId": "https://ror.org/0018yg518"
3737
},
3838
"location": {
3939
"countryCode": "US",
@@ -46,9 +46,9 @@
4646
"providerCode": "CURATOR_REVIEW",
4747
"renderDeprecatedLanding": false,
4848
"renderProtectedLanding": false,
49-
"resourceHomeUrl": "http://arabidopsis.org/index.jsp",
49+
"resourceHomeUrl": "http://arabidopsis.org/",
5050
"sampleId": "2200950",
51-
"urlPattern": "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:{$id}"
51+
"urlPattern": "https://www.arabidopsis.org/locus?accession={$id}"
5252
}
5353
],
5454
"sampleId": "2200950",

registry-data/namespaces/tair.name.json

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -46,9 +46,9 @@
4646
"providerCode": "tair",
4747
"renderDeprecatedLanding": false,
4848
"renderProtectedLanding": false,
49-
"resourceHomeUrl": "https://www.arabidopsis.org/index.jsp",
49+
"resourceHomeUrl": "https://www.arabidopsis.org/",
5050
"sampleId": "AT5G05330",
51-
"urlPattern": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name={$id}"
51+
"urlPattern": "https://www.arabidopsis.org/locus?name={$id}"
5252
}
5353
],
5454
"sampleId": "AT5G05330",

0 commit comments

Comments
 (0)