Unpaired Reads #21
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igordot
AnkeKloock
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Unpaired Reads
#21
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How do I analyze unpaired reads? I have paired reads for my own RNAseq study, but for the ones from other studies I only have unpaired reads. Is there a way to analyze these with SeqNSlide? |
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Answered by
igordot
Jul 16, 2025
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You can use either paired or unpaired reads. When you run |
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igordot
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You can use either paired or unpaired reads. When you run
sns/gather-fastqs, files will be added to thesamples.fastq-raw.csvfile. The first column is the sample name, the second column is the R1 FASTQ, and the third column is the R2 FASTQ (if available). Each line contains a single FASTQ (or a pair of FASTQs for paired-end experiments).