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Merge pull request #7 from imsweb/eod16
Updated to EOD 1.6.
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‎README.md‎

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Versions supported:
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- 1.5 (released February 2019)
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- 1.6 (released April 2019)
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### TNM
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Functional Requirements: You will need the .NET Framework 4.5.2 or higher installed to use this library.
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Data Requirements: You will need the algorithm data files for the TNM Staging Library to work properly. At present there are CS 02.05.50, TNM 1.9, and EOD 1.5 algorithms. You can find a copy of these data files within the TNM Staging source code in the Resources\Algorithms directory. The algorithm data files can be either in separate JSON files, or can be collected together in a compressed file such as .ZIP or .GZ. You can download the zip versions of [CS 02.05.50](https://github.com/imsweb/staging-client-csharp/releases/download/v2.4-beta/CS_02_05_50.zip), [TNM 1.9](https://github.com/imsweb/staging-client-csharp/releases/download/v2.3-beta/TNM_19.zip), and [EOD Public 1.5](https://github.com/imsweb/staging-client-csharp/releases/download/v2.6-beta/EOD_Public_15.zip) here.
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Data Requirements: You will need the algorithm data files for the TNM Staging Library to work properly. At present there are CS 02.05.50, TNM 1.9, and EOD 1.6 algorithms. You can find a copy of these data files within the TNM Staging source code in the Resources\Algorithms directory. The algorithm data files can be either in separate JSON files, or can be collected together in a compressed file such as .ZIP or .GZ. You can download the zip versions of [CS 02.05.50](https://github.com/imsweb/staging-client-csharp/releases/download/v2.4-beta/CS_02_05_50.zip), [TNM 1.9](https://github.com/imsweb/staging-client-csharp/releases/download/v2.3-beta/TNM_19.zip), and [EOD Public 1.6](https://github.com/imsweb/staging-client-csharp/releases/download/v2.7-beta/EOD_Public_16.zip) here.
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## Usage
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TNMStagingCSharp/Resources/Algorithms/eod_public/1.5/schemas/adnexa_uterine_other.json renamed to TNMStagingCSharp/Resources/Algorithms/eod_public/1.6/schemas/adnexa_uterine_other.json

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{
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"id" : "adnexa_uterine_other",
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"algorithm" : "eod_public",
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"version" : "1.5",
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"version" : "1.6",
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"name" : "Adnexa Uterine Other",
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"title" : "Adnexa Uterine Other",
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"notes" : "8000-8700, 8720-8790, 9700-9701 (C571-C574)\n\nC571 Broad ligament\nC572 Round ligament\nC573 Parametrium\nC574 Uterine adnexa\n\n**Note 1:** The following sources were used in the development of this schema\n* SEER Extent of Disease 1988: Codes and Coding Instructions (3rd Edition, 1998) (https://seer.cancer.gov/archive/manuals/EOD10Dig.3rd.pdf)\n* SEER Summary Staging Manual-2000: Codes and Coding Instructions (https://seer.cancer.gov/tools/ssm/ssm2000/)\n* Collaborative Stage Data Collection System, version 02.05: https://cancerstaging.org/cstage/Pages/default.aspx\n\n**Note 2:** See the following schemas for the listed histologies \n* 8710-8714, 8800-8934, 8940-9137, 9141-9582: *Soft Tissue Other*\n* 8935-8936: *GIST*\n* 9140: *Kaposi Sarcoma*\n\n**Note 3:** Summary Stage is the only applicable staging system for this site/histology/schema.",
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} ],
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"involved_tables" : [ "seer_mets_48348", "nodes_dcc", "grade_clinical_standard_non_ajcc_32473", "grade_pathological_standard_non_ajcc_5627", "adnexa_uterine_other_97891", "nodes_pos_fpa", "tumor_size_pathological_25597", "tumor_size_clinical_60979", "primary_site", "histology", "nodes_exam_76029", "grade_post_therapy_standard_non_ajcc_43091", "schema_selection_adnexa_uterine_other", "year_dx_validation", "summary_stage_rpa", "lvi_dna_56663", "tumor_size_summary_63115", "extension_bcn" ],
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"on_invalid_input" : "CONTINUE",
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"last_modified" : "2019-02-14T22:51:31.259Z"
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"last_modified" : "2019-04-02T17:35:58.765Z"
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}

TNMStagingCSharp/Resources/Algorithms/eod_public/1.5/schemas/adrenal_gland.json renamed to TNMStagingCSharp/Resources/Algorithms/eod_public/1.6/schemas/adrenal_gland.json

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{
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"id" : "adrenal_gland",
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"algorithm" : "eod_public",
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"version" : "1.5",
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"version" : "1.6",
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"name" : "Adrenal Gland",
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"title" : "Adrenal Gland",
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"notes" : "8000-8671, 8681-8683, 8691, 8720-8790, 9700-9701\n\nC740 Cortex of adrenal gland \nC741 Medulla of adrenal gland\nC749 Adrenal gland, NOS \n\n**Note 1:** The following sources were used in the development of this schema\n* SEER Extent of Disease 1988: Codes and Coding Instructions (3rd Edition, 1998) (https://seer.cancer.gov/archive/manuals/EOD10Dig.3rd.pdf)\n* SEER Summary Staging Manual-2000: Codes and Coding Instructions (https://seer.cancer.gov/tools/ssm/ssm2000/)\n* Collaborative Stage Data Collection System, version 02.05: https://cancerstaging.org/cstage/Pages/default.aspx\n* Chapter 76 *Adrenal Cortical Carcinoma*, in the AJCC Cancer Staging Manual, Eighth Edition (2017) published by Springer International Publishing. Used with permission of the American College of Surgeons, Chicago, Illinois.\n\n**Note 2:** See the following schemas for the listed histologies \n* 8680, 8690, 8692-8693, 8700: *NET Adrenal*\n* 8710-8714, 8800-8934, 8940-9137, 9141-9582: *Soft Tissue Other*\n* 8935-8936: *GIST*\n* 9140: *Kaposi Sarcoma*",
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} ],
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"involved_tables" : [ "grade_clinical_26293", "radiation_surg_seq", "grade_post_therapy_53423", "nodes_pos_fpa", "tnm8_inclusions_tqc", "parse_t_2177", "parse_n_67182", "histology", "nodes_exam_76029", "lvi_full_56663", "tumor_size_summary_63115", "behavior", "ajcc_chapter_calculation_83485", "grade_pathological_38051", "schema_selection_adrenal_gland", "eod_mets_13303", "seer_primary_tumor_44962", "tnm_8_path_stage_group_for_eod_6629", "tumor_size_pathological_25597", "systemic_surg_seq", "tumor_size_clinical_60979", "tumor_size_with_primary_tumor_for_ajcc_t_57728", "ss2018_adrenal_gland_including_net_adrenal_70096", "parse_m_47057", "primary_site", "eod_tnm_component_cleanup_58170", "year_dx_validation", "summary_stage_rpa", "eod_regional_nodes_22383" ],
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"on_invalid_input" : "CONTINUE",
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"last_modified" : "2019-02-14T22:51:39.024Z"
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"last_modified" : "2019-04-02T17:36:07.253Z"
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}

TNMStagingCSharp/Resources/Algorithms/eod_public/1.5/schemas/ampulla_vater.json renamed to TNMStagingCSharp/Resources/Algorithms/eod_public/1.6/schemas/ampulla_vater.json

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{
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"id" : "ampulla_vater",
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"algorithm" : "eod_public",
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"version" : "1.6",
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"name" : "Ampulla of Vater",
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"title" : "Ampulla of Vater",
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"notes" : "8000-8149, 8154, 8157, 8160-8231, 8243-8248, 8250-8682, 8690-8700, 8720-8790, 9700-9701\n\nC241 Ampulla of Vater\n\n**Note 1:** The following sources were used in the development of this schema\n* SEER Extent of Disease 1988: Codes and Coding Instructions (3rd Edition, 1998) (https://seer.cancer.gov/archive/manuals/EOD10Dig.3rd.pdf)\n* SEER Summary Staging Manual-2000: Codes and Coding Instructions (https://seer.cancer.gov/tools/ssm/ssm2000/)\n* Collaborative Stage Data Collection System, version 02.05: https://cancerstaging.org/cstage/Pages/default.aspx \n* Chapter 27 *Ampulla of Vater*, in the AJCC Cancer Staging Manual, Eighth Edition (2017) published by Springer International Publishing. Used with permission of the American College of Surgeons, Chicago, Illinois.\n\n**Note 2:** See the following schemas for the listed histologies \n* 8150-8153, 8155-8156, 8158, 8240-8242, 8249, 8683; *NET Ampulla of Vater*\n* 8710-8714, 8800-8803, 8810-8921, 8932-8934, 8940-8990, 9000-9016, 9030-9043, 9045-9137, 9141-9230, 9240-9580, 9582: *Soft Tissue Abdomen and Thoracic*\n* 8804-8806, 8930-8931, 8991, 9020, 9044, 9231, 9581: *Soft Tissue Other*\n* 8935-8936: *GIST*\n* 9140: *Kaposi Sarcoma*",
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} ],
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"involved_tables" : [ "radiation_surg_seq", "grade_clinical_6485", "nodes_pos_fpa", "parse_t_2177", "parse_n_67182", "extension_bde", "histology", "nodes_exam_76029", "mets_har", "lvi_full_56663", "tnm8_inclusions_58121", "tumor_size_summary_63115", "behavior", "ss2018_ampulla_of_vater_including_net_96311", "schema_selection_ampulla_vater", "tumor_size_pathological_25597", "ajcc_chapter_calculation_89104", "systemic_surg_seq", "tumor_size_clinical_60979", "parse_m_47057", "tnm8_path_stage_uaa", "primary_site", "eod_tnm_component_cleanup_58170", "grade_pathological_84704", "nodes_dbo", "grade_post_therapy_45742", "year_dx_validation", "summary_stage_rpa" ],
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"on_invalid_input" : "CONTINUE",
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"last_modified" : "2019-02-14T22:51:40.271Z"
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"last_modified" : "2019-04-02T17:36:08.783Z"
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}

TNMStagingCSharp/Resources/Algorithms/eod_public/1.5/schemas/anus.json renamed to TNMStagingCSharp/Resources/Algorithms/eod_public/1.6/schemas/anus.json

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{
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"notes" : "8000-8700, 8720-8790, 9700-9701\n\nC210 Anus, NOS (excluding skin of anus and perianal skin C445)\nC211 Anal canal\nC212 Cloacogenic zone\nC218 Overlapping lesion of rectum, anus and anal canal\t\n\n**Note 1:** The following sources were used in the development of this schema\n* SEER Extent of Disease 1988: Codes and Coding Instructions (3rd Edition, 1998) (https://seer.cancer.gov/archive/manuals/EOD10Dig.3rd.pdf)\n* SEER Summary Staging Manual-2000: Codes and Coding Instructions (https://seer.cancer.gov/tools/ssm/ssm2000/)\n* Collaborative Stage Data Collection System, version 02.05: https://cancerstaging.org/cstage/Pages/default.aspx \n* Chapter 21 *Anus*, in the AJCC Cancer Staging Manual, Eighth Edition (2017) published by Springer International Publishing. Used with permission of the American College of Surgeons, Chicago, Illinois.\n\n**Note 2:** See the following schemas for the listed histologies \n* 8710-8714, 8800-8803, 8810-8921, 8932-8934, 8940-8990, 9000-9016, 9030-9043, 9045-9137, 9141-9230, 9240-9580, 9582: *Soft Tissue Abdomen and Thoracic*\n* 8804-8806, 8930-8931, 8991, 9020, 9044, 9231, 9581: *Soft Tissue Other*\n* 8935-8936: *GIST*\n* 9140: *Kaposi Sarcoma*",
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"involved_tables" : [ "grade_pathological_93273", "radiation_surg_seq", "eod_mets_41985", "nodes_pos_fpa", "parse_t_2177", "tumor_size_with_primary_tumor_for_ajcc_t_87130", "parse_n_67182", "ss2018_anus_55561", "histology", "nodes_exam_76029", "ajcc_chapter_calculation_19982", "lvi_full_56663", "tumor_size_summary_63115", "behavior", "nodes_dab", "tumor_size_pathological_25597", "systemic_surg_seq", "tumor_size_clinical_60979", "grade_clinical_88426", "grade_post_therapy_67956", "parse_m_47057", "schema_selection_anus", "extension_baa", "primary_site", "tnm8_inclusions_23758", "tnm8_path_stage_uab", "eod_tnm_component_cleanup_58170", "year_dx_validation", "summary_stage_rpa" ],
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"on_invalid_input" : "CONTINUE",
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"last_modified" : "2019-04-02T17:36:08.928Z"
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}

TNMStagingCSharp/Resources/Algorithms/eod_public/1.5/schemas/appendix.json renamed to TNMStagingCSharp/Resources/Algorithms/eod_public/1.6/schemas/appendix.json

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{
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} ],
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"involved_tables" : [ "tnm8_path_stage_uar", "radiation_surg_seq", "nodes_dfc", "grade_post_therapy_1833", "mets_hcf", "nodes_pos_fpa", "parse_t_2177", "parse_n_67182", "extension_bfg", "histology", "nodes_exam_76029", "lvi_full_56663", "tumor_size_summary_63115", "combined_grade_56638", "behavior", "rn_positive_with_regional_nodes_for_ajcc_n_46395", "ss2018_appendix_including_netl_54459", "grade_clinical_29193", "tnm8_inclusions_tpc", "cea_pretx_lab_value_33864", "tumor_size_pathological_25597", "systemic_surg_seq", "tumor_size_clinical_60979", "ajcc_chapter_calculation_69851", "cea_pretx_interpretation_99474", "schema_selection_appendix", "parse_m_47057", "primary_site", "eod_tnm_component_cleanup_58170", "year_dx_validation", "summary_stage_rpa", "grade_pathological_57271" ],
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"on_invalid_input" : "CONTINUE",
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"last_modified" : "2019-02-14T22:51:40.539Z"
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"last_modified" : "2019-04-02T17:36:09.131Z"
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}

TNMStagingCSharp/Resources/Algorithms/eod_public/1.5/schemas/bile_ducts_distal.json renamed to TNMStagingCSharp/Resources/Algorithms/eod_public/1.6/schemas/bile_ducts_distal.json

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{
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"notes" : "8000-8700, 8720-8790, 9700-9701 \nSchema Discriminator 1: BileDuctsDistal/BileDuctsPerihilar/CysticDuct: 4, 7\n\nC240 Extrahepatic bile duct\n\n**Note 1:** The following sources were used in the development of this schema\n* SEER Extent of Disease 1988: Codes and Coding Instructions (3rd Edition, 1998) (https://seer.cancer.gov/archive/manuals/EOD10Dig.3rd.pdf)\n* SEER Summary Staging Manual-2000: Codes and Coding Instructions (https://seer.cancer.gov/tools/ssm/ssm2000/)\n* Collaborative Stage Data Collection System, version 02.05: https://cancerstaging.org/cstage/Pages/default.aspx \n* Chapter 26 *Distal Bile Duct*, in the AJCC Cancer Staging Manual, Eighth Edition (2017) published by Springer International Publishing. Used with permission of the American College of Surgeons, Chicago, Illinois.\n\n**Note 2:** *Schema Discriminator 1: BileDuctsDistal/BileDuctsPerihilar/CysticDuct* is used to discriminate between Distal Bile Duct, Perihilar Bile Duct, and Cystic Duct which are coded to ICD-O-3 code C240.\n\n**Note 3:** See the following schemas for the listed histologies \n* 8000-8700, 8720-8790, 9700-9701 (Schema Discriminator 1: BileDuctsDistal/BileDuctsPerihilar/CysticDuct: 1, 5, 6, 9): *Bile Ducts Perihilar*\n* 8000-8700, 8720-8790, 9700-9701 (Schema Discriminator 1: BileDuctsDistal/BileDuctsPerihilar/CysticDuct: 3): *Cystic Duct*\n* 8710-8714, 8800-8803, 8810-8921, 8932-8934, 8940-8990, 9000-9016, 9030-9043, 9045-9137, 9141-9230, 9240-9580, 9582: *Soft Tissue Abdomen and Thoracic*\n* 8804-8806, 8930-8931, 8991, 9020, 9044, 9231, 9581: *Soft Tissue Other*\n* 8935-8936: *GIST*\n* 9140: *Kaposi Sarcoma*",
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} ],
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"involved_tables" : [ "radiation_surg_seq", "mets_hcq", "rn_positive_with_regional_nodes_for_ajcc_n_62318", "nodes_dfn", "grade_clinical_6485", "tnm_8_path_stage_group_for_eod_55369", "nodes_pos_fpa", "parse_t_2177", "parse_n_67182", "histology", "nodes_exam_76029", "ajcc_chapter_calculation_91168", "lvi_full_56663", "tumor_size_summary_63115", "extension_bfs", "behavior", "tnm8_inclusions_tpe", "bileductsdistal_bileductsperihilar_cysticduct_24541", "schema_selection_bile_ducts_distal", "tumor_size_pathological_25597", "systemic_surg_seq", "tumor_size_clinical_60979", "parse_m_47057", "primary_site", "eod_tnm_component_cleanup_58170", "ss2018_extrahepatic_bile_ducts_65728", "grade_pathological_84704", "tumor_size_with_primary_tumor_for_ajcc_t_85997", "grade_post_therapy_45742", "year_dx_validation", "summary_stage_rpa" ],
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"on_invalid_input" : "CONTINUE",
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"last_modified" : "2019-02-14T22:51:40.672Z"
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"last_modified" : "2019-04-02T17:36:09.311Z"
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}

TNMStagingCSharp/Resources/Algorithms/eod_public/1.5/schemas/bile_ducts_intrahepat.json renamed to TNMStagingCSharp/Resources/Algorithms/eod_public/1.6/schemas/bile_ducts_intrahepat.json

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{
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"name" : "Bile Ducts Intrahepatic",
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"title" : "Bile Ducts Intrahepatic",
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"notes" : "8000-8700, 8720-8790, 8980, 9700-9701\n\nC221 Intrahepatic bile duct\n\n**Note 1:** The following sources were used in the development of this schema\n* SEER Extent of Disease 1988: Codes and Coding Instructions (3rd Edition, 1998) (https://seer.cancer.gov/archive/manuals/EOD10Dig.3rd.pdf)\n* SEER Summary Staging Manual-2000: Codes and Coding Instructions (https://seer.cancer.gov/tools/ssm/ssm2000/)\n* Collaborative Stage Data Collection System, version 02.05: https://cancerstaging.org/cstage/Pages/default.aspx \n* Chapter 23 *Intrahepatic Bile Ducts*, in the AJCC Cancer Staging Manual, Eighth Edition (2017) published by Springer International Publishing. Used with permission of the American College of Surgeons, Chicago, Illinois.\n\n**Note 2:** See the following schemas for the listed histologies \n* 8710-8714, 8800-8803, 8810-8921, 8932-8934, 8940-8975, 8981-8990, 9000-9016, 9030-9043, 9045-9137, 9141-9230, 9240-9580, 9582: *Soft Tissue Abdomen and Thoracic*\n* 8804-8806, 8930-8931, 8991, 9020, 9044, 9231, 9581: *Soft Tissue Other*\n* 8935-8936: *GIST*\n* 9140: *Kaposi Sarcoma*",
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} ],
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"involved_tables" : [ "tumor_growth_pattern_31889", "ss2018_intrahepatic_bile_ducts_51957", "radiation_surg_seq", "tumor_size_with_primary_tumor_for_ajcc_t_76336", "grade_clinical_6485", "nodes_pos_fpa", "parse_t_2177", "ajcc_chapter_calculation_39839", "parse_n_67182", "fibrosis_score_38658", "histology", "nodes_exam_76029", "lvi_full_56663", "tnm8_inclusions_tpt", "tumor_size_summary_63115", "behavior", "nodes_dew", "tnm8_path_stage_ubi", "primary_scleros_cholangitis_86402", "tumor_size_pathological_25597", "systemic_surg_seq", "tumor_size_clinical_60979", "extension_bfa", "mets_hbz", "parse_m_47057", "primary_site", "eod_tnm_component_cleanup_58170", "grade_pathological_84704", "grade_post_therapy_45742", "year_dx_validation", "summary_stage_rpa", "schema_selection_bile_ducts_intrahepat" ],
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"on_invalid_input" : "CONTINUE",
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"last_modified" : "2019-02-14T22:51:40.794Z"
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"last_modified" : "2019-04-02T17:36:09.472Z"
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}

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