🍱 Link DOIs in Study

Author: RobertJCarroll

src/include_access_model/datamodel/include_access_model.py

@@ -1,5 +1,5 @@
 # Auto generated from include_access_model.yaml by pythongen.py version: 0.0.1
-# Generation date: 2025-11-10T20:17:42
+# Generation date: 2025-11-11T07:37:46
 # Schema: include-access-model
 #
 # id: https://includedcc.org/include-access-model
@@ -177,6 +177,7 @@ class Study(Record):
     publication: Optional[Union[Union[str, PublicationId], list[Union[str, PublicationId]]]] = empty_list()
     acknowledgments: Optional[str] = None
     citation_statement: Optional[str] = None
+    doi: Optional[Union[str, DOIId]] = None
 
     def __post_init__(self, *_: str, **kwargs: Any):
         if self._is_empty(self.id):
@@ -286,6 +287,9 @@ def __post_init__(self, *_: str, **kwargs: Any):
         if self.citation_statement is not None and not isinstance(self.citation_statement, str):
             self.citation_statement = str(self.citation_statement)
 
+        if self.doi is not None and not isinstance(self.doi, DOIId):
+            self.doi = DOIId(self.doi)
+
         super().__post_init__(**kwargs)
 
 

src/include_access_model/datamodel/include_access_model_pydantic.py

@@ -265,6 +265,7 @@ class Study(Record):
     actual_number_of_participants: int = Field(default=..., title="Actual Number of Participants", description="""Total participants included at this time.""", json_schema_extra = { "linkml_meta": {'domain_of': ['Study']} })
     acknowledgments: Optional[str] = Field(default=None, title="Acknowledgments", description="""Funding statement and acknowledgments for this study""", json_schema_extra = { "linkml_meta": {'domain_of': ['Study']} })
     citation_statement: Optional[str] = Field(default=None, title="Citation Statement", description="""Statement that secondary data users should use to acknowledge use of this study or dataset. E.g., \"The results analyzed and <published or shown> here are based in whole or in part upon data generated by the INCLUDE (INvestigation of Co-occurring conditions across the Lifespan to Understand Down syndromE) Project <insert accession number(s) and/or study DOI(s)>, and were accessed from the INCLUDE Data Hub and <insert other database(s)>.\"""", json_schema_extra = { "linkml_meta": {'domain_of': ['Study']} })
+    doi: Optional[str] = Field(default=None, title="DOI", description="""Digital Object Identifier (DOI) for this Record.""", json_schema_extra = { "linkml_meta": {'domain_of': ['Study', 'DOI']} })
     uuid: str = Field(default=..., title="UUID", description="""Internally assigned UUID for data management and QC purposes""", json_schema_extra = { "linkml_meta": {'domain_of': ['Record']} })
     id: str = Field(default=..., title="ID", description="""INLCUDE Global ID for this record""", json_schema_extra = { "linkml_meta": {'domain_of': ['Record']} })
     external_id: Optional[list[str]] = Field(default=[], title="External Identifiers", description="""Other identifiers for this entity, eg, from the submitting study or in systems like dbGaP""", json_schema_extra = { "linkml_meta": {'domain_of': ['Record']} })
@@ -294,7 +295,7 @@ class DOI(Record):
     linkml_meta: ClassVar[LinkMLMeta] = LinkMLMeta({'from_schema': 'https://includedcc.org/include-access-model',
          'title': 'Digital Object Identifier (DOI)'})
 
-    doi: Optional[str] = Field(default=None, title="DOI", description="""Digital Object Identifier (DOI) for this Record.""", json_schema_extra = { "linkml_meta": {'domain_of': ['DOI']} })
+    doi: Optional[str] = Field(default=None, title="DOI", description="""Digital Object Identifier (DOI) for this Record.""", json_schema_extra = { "linkml_meta": {'domain_of': ['Study', 'DOI']} })
     bibliographic_reference: Optional[str] = Field(default=None, title="Bibiliographic Reference", description="""Text use to reference this Record.""", json_schema_extra = { "linkml_meta": {'domain_of': ['DOI', 'Publication']} })
     uuid: str = Field(default=..., title="UUID", description="""Internally assigned UUID for data management and QC purposes""", json_schema_extra = { "linkml_meta": {'domain_of': ['Record']} })
     id: str = Field(default=..., title="ID", description="""INLCUDE Global ID for this record""", json_schema_extra = { "linkml_meta": {'domain_of': ['Record']} })

src/include_access_model/schema/include_access_model.yaml

@@ -72,8 +72,7 @@ classes:
 #    - guidMapped
       - acknowledgments
       - citation_statement
-#      - doi
-#      - doi_citation
+      - doi
   VirtualBiorepository:
     title: Virtual BioRepository (VBR)
     description: An organization that can provide access to specimen for further analysis.