fix(cli): skip profile loading in CI mode to use config file URLs

In CI environments (GitHub Actions, etc.), the CLI was incorrectly
creating a default "cloud" profile that overrode the config file URLs.
This caused E2E tests to fail when the local dev server was running
but the CLI tried to push to the cloud API.

Changes:
- Skip profile loading entirely when CI is detected
- Use config file URLs directly in CI mode without INKEEP_API_KEY
- Log helpful message when CI mode uses config file settings
- Still apply CI env var overrides when INKEEP_API_KEY is set

This aligns with the CI/CD support design: detect CI, fall back to
config file settings, support API key in inkeep.config.ts.

Author: amikofalvy

agents-cli/src/utils/cli-pipeline.ts

@@ -101,42 +101,52 @@ export async function initializeCommand(
     const ciDetection = await detectCIEnvironment();
     const ciConfig = ciDetection.isCI ? loadCIEnvironmentConfig() : null;
 
-    // If in CI mode with API key, use CI configuration
-    if (ciDetection.isCI && ciConfig) {
-      // Load file config as base but override with CI env vars
+    // In CI mode, use config file + CI env vars, skip profile loading entirely
+    // This prevents ProfileManager from auto-creating a "cloud" profile that would
+    // override config file URLs
+    if (ciDetection.isCI) {
+      // Load file config as base
       const config = await validateConfiguration(configPath, tag);
 
-      // CI env vars take precedence over file config
-      if (ciConfig.manageApiUrl) {
-        config.agentsManageApiUrl = ciConfig.manageApiUrl;
-      }
-      if (ciConfig.runApiUrl) {
-        config.agentsRunApiUrl = ciConfig.runApiUrl;
-      }
-      if (ciConfig.apiKey) {
-        config.agentsManageApiKey = ciConfig.apiKey;
-      }
-      if (ciConfig.tenantId) {
-        config.tenantId = ciConfig.tenantId;
+      // CI env vars take precedence over file config (if ciConfig is available)
+      if (ciConfig) {
+        if (ciConfig.manageApiUrl) {
+          config.agentsManageApiUrl = ciConfig.manageApiUrl;
+        }
+        if (ciConfig.runApiUrl) {
+          config.agentsRunApiUrl = ciConfig.runApiUrl;
+        }
+        if (ciConfig.apiKey) {
+          config.agentsManageApiKey = ciConfig.apiKey;
+        }
+        if (ciConfig.tenantId) {
+          config.tenantId = ciConfig.tenantId;
+        }
       }
 
       if (s) {
         s.stop('Configuration loaded');
       }
 
       if (logConfig && !quiet) {
-        logCIConfig(ciConfig, ciDetection.reason);
+        if (ciConfig) {
+          logCIConfig(ciConfig, ciDetection.reason);
+        } else {
+          console.log(chalk.yellow(`CI mode detected (${ciDetection.reason})`));
+          console.log(chalk.gray(`  Using config file settings (no INKEEP_API_KEY set)`));
+          console.log(chalk.gray(`  Remote: ${config.agentsManageApiUrl}`));
+        }
       }
 
       return {
         config,
-        isAuthenticated: !!ciConfig.apiKey,
+        isAuthenticated: !!ciConfig?.apiKey,
         isCI: true,
-        ciConfig,
+        ciConfig: ciConfig ?? undefined,
       };
     }
 
-    // Try to load profile configuration
+    // Non-CI mode: Try to load profile configuration
     let profile: ResolvedProfile | undefined;
     let isAuthenticated = false;
     let authExpiry: string | undefined;