switch from `staged-dependencies` to `setup-r-dependencies` for deps install

[pawelru]

Our new target solution for installing the dependencies is setup-r-dependencies GHA. Currently this is implemented by deps-installation-method parameter of most of our higher level actions. The default value is staged-dependencies which follows the existing / old logic. The task is to change it to the new value (and resolve issues if any).

More info:

• a PR with that feature: feat: add an option to choose between staged-dependencies and setup-r-dependencies r.pkg.template#252
• an example of PR to be done: Run GitHub Actions with setup-r-dependencies installation strategy - - - - Bye Bye staged-dependencies teal#1361

This is done in that way to conduct migration product by product at its own pace. Then (some time in the future) we will soft deprecate that parameter and archive staged.dependencies at all.

Repos:

Part 1

• teal.logger add setup-r-dependencies teal.logger#102
• teal.widgets add setup-r-dependencies teal.widgets#274
• teal.code add setup-r-dependencies teal.code#238
• teal.data add setup-r-dependencies teal.data#355
• teal.slice add setup-r-dependencies teal.slice#631
• teal
• teal.transform add setup-r-dependencies teal.transform#227
• teal.reporter add setup-r-dependencies teal.reporter#292
• teal.modules.general add setup-r-dependencies teal.modules.general#815
• teal.modules.clinical add setup-r-dependencies teal.modules.clinical#1297
• teal.goshawk add setup-r-dependencies teal.goshawk#325
• teal.osprey add setup-r-dependencies teal.osprey#289
• teal.modules.helios https://github.com/insightsengineering/teal.modules.helios/pull/143
• teal.modules.hermes add setup-r-dependencies teal.modules.hermes#395

Part 2

• nestcolor switch from staged-dependencies to setup-r-dependencies for deps install nestcolor#77
• roxy.shinylive
• formatters switch from staged-dependencies to setup-r-dependencies for deps install formatters#324
• rtables switch from staged-dependencies to setup-r-dependencies for deps install rtables#940
• rlistings switch from staged-dependencies to setup-r-dependencies for deps install rlistings#229
• tern.gee switch from staged-dependencies to setup-r-dependencies for deps install tern.gee#76
• tern.mmrm switch from staged-dependencies to setup-r-dependencies for deps install tern.mmrm#194
• tern.rbmi switch from staged-dependencies to setup-r-dependencies for deps install tern.rbmi#74
• tern switch from staged-dependencies to setup-r-dependencies for deps install tern#1340
• chevron switch from staged-dependencies to setup-r-dependencies for deps install chevron#791
• dunlin switch from staged-dependencies to setup-r-dependencies for deps install dunlin#169
• insightsengineering/citril.metadata#95
• insightsengineering/citril#460
• cards switch from staged-dependencies to setup-r-dependencies for deps install cards#350
• cardx switch from staged-dependencies to setup-r-dependencies for deps install cardx#227
• random.cdisc.data random.cdisc.data#321
• osprey add setup-r-dependencies osprey#146
• goshawk add setup-r-dependencies goshawk#261
• helios https://github.com/insightsengineering/helios/pull/661
• hermes add setup-r-dependencies hermes#233
• tlg-catalog switch from staged-dependencies to setup-r-dependencies for deps install tlg-catalog#277
• scda.test switch from staged-dependencies to setup-r-dependencies for deps install scda.test#158
• verdepcheck
• rtables.officer switch from staged-dependencies to setup-r-dependencies for deps install rtables.officer#12