remove inputs that do not exist in r-lib/actions/setup-r-dependncies nor in r-hub/actions/setup-deps

Author: m7pr

.github/workflows/bioccheck.yaml

@@ -61,12 +61,6 @@ on:
         required: false
         type: string
         default: staged-dependencies
-      lookup-refs:
-        description: |
-          List of package references to be used by setup-r-dependencies action if deps-installation-method == 'setup-r-dependencies'.
-        required: false
-        type: string
-        default: ""
 
 concurrency:
   group: bioccheck-${{ github.event.pull_request.number || github.ref }}
@@ -158,7 +152,7 @@ jobs:
       - name: Setup R dependencies 🎦
         if: >-
           inputs.deps-installation-method == 'setup-r-dependencies'
-        uses: insightsengineering/setup-r-dependencies@v1
+        uses: r-lib/actions/setup-r-dependencies@v2
         env:
           GITHUB_PAT: ${{ steps.github-token.outputs.token }}
         with:

.github/workflows/build-check-install.yaml

@@ -138,40 +138,13 @@ on:
         required: false
         type: string
         default: staged-dependencies
-      lookup-refs:
-        description: |
-          List of package references to be used by setup-r-dependencies action if deps-installation-method == 'setup-r-dependencies'.
-        required: false
-        type: string
-        default: ""
-      skip-desc-branch:
-        description: |
-          Passed to `r-lib/setup-r-dependencies`.
-          Used only if deps-installation-method == 'setup-r-dependencies'.
-        required: false
-        type: boolean
-        default: false
-      skip-desc-dev:
-        description: |
-          Passed to `r-lib/setup-r-dependencies`.
-          Used only if deps-installation-method == 'setup-r-dependencies'.
-        required: false
-        type: boolean
-        default: false
-      repository-list:
-        description: |
-          Passed to `r-lib/setup-r-dependencies`.
-          Used only if deps-installation-method == 'setup-r-dependencies'.
-        required: false
-        type: string
-        default: "PPM=PPM@latest"
       cache-version:
         description: |
-          Passed to `r-lib/setup-r-dependencies`.
+          Passed to `r-lib/actions/setup-r-dependencies`.
           Used only if deps-installation-method == 'setup-r-dependencies'.
         required: false
         type: string
-        default: "1"
+        default: 1
       unit-test-report-brand:
         description: Image URL to use in unit test report for branding. If empty, the default xunit-viewer brand will be used.
         required: false

.github/workflows/pkgdown.yaml

@@ -128,12 +128,6 @@ on:
         required: false
         type: string
         default: staged-dependencies
-      lookup-refs:
-        description: |
-          List of package references to be used by setup-r-dependencies action if deps-installation-method == 'setup-r-dependencies'.
-        required: false
-        type: string
-        default: ""
 
 concurrency:
   group: docs-${{ github.event.pull_request.number || github.ref }}

.github/workflows/rhub.yaml

@@ -40,13 +40,6 @@ on:
           gcc13,
           noSuggests,
           donttest
-      lookup-refs:
-        description: |
-          List of package references to be used for the feature branch.
-          Multiple entries in new lines or separated by commas.
-        required: false
-        default: ""
-        type: string
 
 concurrency:
   group: r-hub-${{ github.event.pull_request.number || github.ref }}

.github/workflows/roxygen.yaml

@@ -49,13 +49,6 @@ on:
         required: false
         type: string
         default: staged-dependencies
-      lookup-refs:
-        description: |
-          Passed to r-lib/setup-r-dependencies. See its documentation.
-          Used only if deps-installation-method == 'setup-r-dependencies'.
-        required: false
-        type: string
-        default: ""
     secrets:
       REPO_GITHUB_TOKEN:
         description: |

.github/workflows/test-coverage.yaml

@@ -90,12 +90,6 @@ on:
         required: false
         type: string
         default: staged-dependencies
-      lookup-refs:
-        description: |
-          List of package references to be used by setup-r-dependencies action if deps-installation-method == 'setup-r-dependencies'.
-        required: false
-        type: string
-        default: ""
     secrets:
       REPO_GITHUB_TOKEN:
         description: |

.github/workflows/validation.yaml

@@ -46,12 +46,6 @@ on:
         required: false
         type: string
         default: staged-dependencies
-      lookup-refs:
-        description: |
-          List of package references to be used by setup-r-dependencies action if deps-installation-method == 'setup-r-dependencies'.
-        required: false
-        type: string
-        default: ""
     secrets:
       REPO_GITHUB_TOKEN:
         description: |