setup-r-deps: replace github-token param with GITHUB_PAT env var

Author: pawelru

.github/workflows/bioccheck.yaml

@@ -158,10 +158,11 @@ jobs:
       - name: Setup R dependencies 🎦
         if: >-
           inputs.deps-installation-method == 'setup-r-dependencies'
-        uses: insightsengineering/setup-r-dependencies@v1
+        uses: insightsengineering/setup-r-dependencies@rm_param_github_token
+        env:
+          GITHUB_PAT: ${{ steps.github-token.outputs.token }}
         with:
           lookup-refs: ${{ inputs.lookup-refs }}
-          github-token: ${{ steps.github-token.outputs.token }}
           repository-path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}
 
       - name: Run BiocCheck ☣️

.github/workflows/build-check-install.yaml

@@ -436,10 +436,11 @@ jobs:
         if: >-
           env.deps_installation_method == 'setup-r-dependencies'
           && inputs.install-deps-from-package-repositories == ''
-        uses: insightsengineering/setup-r-dependencies@v1
+        uses: insightsengineering/setup-r-dependencies@rm_param_github_token
+        env:
+          GITHUB_PAT: ${{ steps.github-token.outputs.token }}
         with:
           lookup-refs: ${{ inputs.lookup-refs }}
-          github-token: ${{ steps.github-token.outputs.token }}
           repository-path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}
           skip-desc-branch: ${{ inputs.skip-desc-branch }}
           skip-desc-dev: ${{ inputs.skip-desc-dev }}

.github/workflows/pkgdown.yaml

@@ -230,10 +230,11 @@ jobs:
       - name: Setup R dependencies 🎦
         if: >-
           inputs.deps-installation-method == 'setup-r-dependencies'
-        uses: insightsengineering/setup-r-dependencies@v1
+        uses: insightsengineering/setup-r-dependencies@rm_param_github_token
+        env:
+          GITHUB_PAT: ${{ steps.github-token.outputs.token }}
         with:
           lookup-refs: ${{ inputs.lookup-refs }}
-          github-token: ${{ steps.github-token.outputs.token }}
           repository-path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}
 
       - name: Install R package 🚧

.github/workflows/revdepcheck.yaml

@@ -91,11 +91,12 @@ jobs:
         shell: bash
 
       - name: Install dependencies
-        uses: insightsengineering/setup-r-dependencies@v1
+        uses: insightsengineering/setup-r-dependencies@rm_param_github_token
+        env:
+          GITHUB_PAT: ${{ steps.github-token.outputs.token }}
         with:
           lookup-refs: ${{ inputs.lookup-refs }}
           skip-desc-branch: true
-          github-token: ${{ steps.github-token.outputs.token }}
 
       - name: revdepcheck 🔄
         id: revdepcheck

.github/workflows/rhub.yaml

@@ -96,11 +96,12 @@ jobs:
         with:
           job-config: ${{ matrix.config.job-config }}
 
-      - uses: insightsengineering/setup-r-dependencies@v1
+      - uses: insightsengineering/setup-r-dependencies@rm_param_github_token
+        env:
+          GITHUB_PAT: ${{ steps.github-token.outputs.token }}
         with:
           lookup-refs: ${{ inputs.lookup-refs }}
           skip-install: true
-          github-token: ${{ steps.github-token.outputs.token }}
           restore-description: false
           install-quarto: "false"
 
@@ -148,11 +149,12 @@ jobs:
         with:
           job-config: ${{ matrix.config.job-config }}
 
-      - uses: insightsengineering/setup-r-dependencies@v1
+      - uses: insightsengineering/setup-r-dependencies@rm_param_github_token
+        env:
+          GITHUB_PAT: ${{ steps.github-token.outputs.token }}
         with:
           lookup-refs: ${{ inputs.lookup-refs }}
           skip-install: true
-          github-token: ${{ steps.github-token.outputs.token }}
           restore-description: false
           install-quarto: "false"
 

.github/workflows/roxygen.yaml

@@ -152,10 +152,11 @@ jobs:
       - name: Setup R dependencies 🎦
         if: >-
           env.deps_installation_method == 'setup-r-dependencies'
-        uses: insightsengineering/setup-r-dependencies@v1
+        uses: insightsengineering/setup-r-dependencies@rm_param_github_token
+        env:
+          GITHUB_PAT: ${{ steps.github-token.outputs.token }}
         with:
           lookup-refs: ${{ inputs.lookup-refs }}
-          github-token: ${{ steps.github-token.outputs.token }}
           repository-path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}
 
       - name: Generate man pages 📄

.github/workflows/test-coverage.yaml

@@ -243,10 +243,11 @@ jobs:
       - name: Setup R dependencies 🎦
         if: >-
           inputs.deps-installation-method == 'setup-r-dependencies'
-        uses: insightsengineering/setup-r-dependencies@v1
+        uses: insightsengineering/setup-r-dependencies@rm_param_github_token
+        env:
+          GITHUB_PAT: ${{ steps.github-token.outputs.token }}
         with:
           lookup-refs: ${{ inputs.lookup-refs }}
-          github-token: ${{ steps.github-token.outputs.token }}
           repository-path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}
 
       - name: Install R package 🚧

.github/workflows/validation.yaml

@@ -147,10 +147,11 @@ jobs:
       - name: Setup R dependencies 🎦
         if: >-
           inputs.deps-installation-method == 'setup-r-dependencies'
-        uses: insightsengineering/setup-r-dependencies@v1
+        uses: insightsengineering/setup-r-dependencies@rm_param_github_token
+        env:
+          GITHUB_PAT: ${{ steps.github-token.outputs.token }}
         with:
           lookup-refs: ${{ inputs.lookup-refs }}
-          github-token: ${{ steps.github-token.outputs.token }}
           repository-path: ${{ env.package_subdirectory }}
 
       - name: Build report 🏗