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edelaruashajoezhu
edelarua
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shajoezhu
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Update EG templates (#169)
Closes #167 --------- Signed-off-by: Joe Zhu <[email protected]> Co-authored-by: Joe Zhu <[email protected]>
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‎DESCRIPTION‎

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@@ -28,7 +28,7 @@ Depends:
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tern (>= 0.9.6.9015)
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Imports:
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pharmaverseadam (>= 1.1.0),
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random.cdisc.data (>= 0.3.15.9001)
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random.cdisc.data (>= 0.3.16)
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Suggests:
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broom,
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checkmate,
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VignetteBuilder:
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knitr
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Remotes:
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pharmaverse/pharmaverseadam@main,
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insightsengineering/tern@main
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biocViews:
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Config/Needs/website: insightsengineering/nesttemplate

‎tests/testthat/_snaps/listing_egl01.md‎

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‎tests/testthat/_snaps/table_egt01.md‎

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‎tests/testthat/_snaps/table_egt02.md‎

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Heart Rate (beats/min)
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Low 0/84 0/72 0/94
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High 4/84 (4.8%) 0/72 0/94
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QT Duration (msec)
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QT Duration (ms)
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Low 55/84 (65.5%) 44/72 (61.1%) 52/94 (55.3%)
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High 84/84 (100%) 72/72 (100%) 93/94 (98.9%)
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RR Duration (msec)
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RR Duration (ms)
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Low 84/84 (100%) 72/72 (100%) 94/94 (100%)
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High 0/84 0/72 0/94
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Heart Rate (beats/min)
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Low 0/84 0/72 0/94
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High 4/84 (4.8%) 0/72 0/94
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QT Duration (msec)
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Low 52/84 (61.9%) 44/72 (61.1%) 51/94 (54.3%)
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High 83/84 (98.8%) 72/72 (100%) 90/94 (95.7%)
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RR Duration (msec)
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Low 84/84 (100%) 72/72 (100%) 94/94 (100%)
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QT Duration (ms)
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Low 55/84 (65.5%) 44/72 (61.1%) 52/94 (55.3%)
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High 37/37 (100%) 35/35 (100%) 44/44 (100%)
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RR Duration (ms)
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Low 12/12 (100%) 6/6 (100%) 10/10 (100%)
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High 0/84 0/72 0/94
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‎tests/testthat/_snaps/table_egt03.md‎

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Code
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res
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Output
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LOW NORMAL HIGH Missing
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—————————————————————————————————————————————————————————————————
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Placebo (N=86)
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n 0 333 0 3
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LOW 0 84 (25%) 0 0
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NORMAL 0 249 (74.1%) 0 0
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HIGH 0 0 0 0
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Missing 0 0 0 3 (0.9%)
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Xanomeline High Dose (N=84)
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n 0 327 0 1
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LOW 0 82 (25%) 0 0
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NORMAL 0 245 (74.7%) 0 0
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HIGH 0 0 0 0
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Missing 0 0 0 1 (0.3%)
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Xanomeline Low Dose (N=84)
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n 0 335 0 1
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LOW 0 84 (25%) 0 0
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NORMAL 0 251 (74.7%) 0 0
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HIGH 0 0 0 0
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Missing 0 0 0 1 (0.3%)
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LOW NORMAL HIGH Missing
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———————————————————————————————————————————————————————————————————————
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Placebo (N=84)
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n 37 45 0 2
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LOW 15 (17.9%) 14 (16.7%) 0 2 (2.4%)
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NORMAL 20 (23.8%) 31 (36.9%) 0 0
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HIGH 0 0 0 0
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Missing 2 (2.4%) 0 0 0
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Xanomeline High Dose (N=82)
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n 30 50 0 2
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LOW 13 (15.9%) 20 (24.4%) 0 2 (2.4%)
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NORMAL 17 (20.7%) 29 (35.4%) 0 0
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HIGH 0 0 0 0
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Missing 0 1 (1.2%) 0 0
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Xanomeline Low Dose (N=84)
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n 32 51 0 1
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LOW 10 (11.9%) 21 (25%) 0 1 (1.2%)
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NORMAL 22 (26.2%) 28 (33.3%) 0 0
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HIGH 0 0 0 0
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Missing 0 2 (2.4%) 0 0
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# EGT03 variant 2 is produced correctly
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Code
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res
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Output
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NORMAL
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—————————————————————————————————————————
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Placebo (N=86)
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n 336
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LOW 84 (25%)
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NORMAL 249 (74.1%)
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HIGH 0
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Missing 3 (0.9%)
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Xanomeline High Dose (N=84)
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n 328
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LOW 82 (25%)
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NORMAL 245 (74.7%)
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HIGH 0
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Missing 1 (0.3%)
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Xanomeline Low Dose (N=84)
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n 336
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LOW 84 (25%)
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NORMAL 251 (74.7%)
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HIGH 0
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Missing 1 (0.3%)
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LOW NORMAL
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—————————————————————————————————————————————————————
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Placebo (N=84)
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n 38 46
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LOW 16 (19%) 15 (17.9%)
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NORMAL 20 (23.8%) 31 (36.9%)
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HIGH 0 0
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Missing 2 (2.4%) 0
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Xanomeline High Dose (N=82)
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n 30 52
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LOW 13 (15.9%) 22 (26.8%)
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NORMAL 17 (20.7%) 29 (35.4%)
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HIGH 0 0
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Missing 0 1 (1.2%)
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Xanomeline Low Dose (N=84)
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n 32 52
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LOW 10 (11.9%) 22 (26.2%)
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NORMAL 22 (26.2%) 28 (33.3%)
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HIGH 0 0
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Missing 0 2 (2.4%)
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# EGT03 variant 3 is produced correctly
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Code
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res
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Output
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LOW NORMAL HIGH Missing
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—————————————————————————————————————————————————————————————————
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Placebo (N=86)
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n 0 333 0 3
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LOW 0 84 (25%) 0 0
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NORMAL 0 249 (74.1%) 0 0
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HIGH 0 0 0 0
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Missing 0 0 0 3 (0.9%)
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Xanomeline High Dose (N=84)
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n 0 327 0 1
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LOW 0 82 (25%) 0 0
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NORMAL 0 245 (74.7%) 0 0
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HIGH 0 0 0 0
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Missing 0 0 0 1 (0.3%)
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Xanomeline Low Dose (N=84)
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n 0 335 0 1
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LOW 0 84 (25%) 0 0
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NORMAL 0 251 (74.7%) 0 0
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HIGH 0 0 0 0
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Missing 0 0 0 1 (0.3%)
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LOW NORMAL HIGH Missing
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———————————————————————————————————————————————————————————————————————
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Placebo (N=84)
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n 37 45 0 2
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LOW 15 (17.9%) 14 (16.7%) 0 2 (2.4%)
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NORMAL 20 (23.8%) 31 (36.9%) 0 0
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HIGH 0 0 0 0
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Missing 2 (2.4%) 0 0 0
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Xanomeline High Dose (N=82)
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n 30 50 0 2
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LOW 13 (15.9%) 20 (24.4%) 0 2 (2.4%)
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NORMAL 17 (20.7%) 29 (35.4%) 0 0
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HIGH 0 0 0 0
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Missing 0 1 (1.2%) 0 0
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Xanomeline Low Dose (N=84)
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n 32 51 0 1
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LOW 10 (11.9%) 21 (25%) 0 1 (1.2%)
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NORMAL 22 (26.2%) 28 (33.3%) 0 0
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HIGH 0 0 0 0
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Missing 0 2 (2.4%) 0 0
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# EGT03 variant 4 is produced correctly
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Code
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res
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Output
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LOW NORMAL HIGH Missing
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—————————————————————————————————————————————————————————————————
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Placebo (N=86)
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n 0 333 0 3
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LOW 0 84 (25%) 0 0
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NORMAL 0 249 (74.1%) 0 0
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HIGH 0 0 0 0
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Missing 0 0 0 3 (0.9%)
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Xanomeline High Dose (N=84)
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n 0 327 0 1
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LOW 0 82 (25%) 0 0
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NORMAL 0 245 (74.7%) 0 0
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HIGH 0 0 0 0
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Missing 0 0 0 1 (0.3%)
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Xanomeline Low Dose (N=84)
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n 0 335 0 1
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LOW 0 84 (25%) 0 0
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NORMAL 0 251 (74.7%) 0 0
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HIGH 0 0 0 0
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Missing 0 0 0 1 (0.3%)
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LOW NORMAL HIGH Missing
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———————————————————————————————————————————————————————————————————————
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Placebo (N=84)
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n 37 45 0 2
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LOW 15 (17.9%) 14 (16.7%) 0 2 (2.4%)
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NORMAL 20 (23.8%) 31 (36.9%) 0 0
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HIGH 0 0 0 0
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Missing 2 (2.4%) 0 0 0
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Xanomeline High Dose (N=82)
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n 30 50 0 2
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LOW 13 (15.9%) 20 (24.4%) 0 2 (2.4%)
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NORMAL 17 (20.7%) 29 (35.4%) 0 0
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HIGH 0 0 0 0
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Missing 0 1 (1.2%) 0 0
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Xanomeline Low Dose (N=84)
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n 32 51 0 1
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LOW 10 (11.9%) 21 (25%) 0 1 (1.2%)
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NORMAL 22 (26.2%) 28 (33.3%) 0 0
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HIGH 0 0 0 0
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Missing 0 2 (2.4%) 0 0
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