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vedhavvedhav
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add setup-r-dependencies (#1297)
Related to insightsengineering/nestdevs-tasks#65 Switch to setup-r-dependencies. Added `teal.modules.clinical` for lookup-refs.
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‎.github/workflows/check.yaml‎

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checking top-level files .* NOTE
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unit-test-report-brand: >-
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https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/thumbs/teal.png
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deps-installation-method: setup-r-dependencies
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lookup-refs: |
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insightsengineering/teal
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insightsengineering/teal.transform
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insightsengineering/tern
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insightsengineering/rlistings
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insightsengineering/formatters
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insightsengineering/rtables
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insightsengineering/rtables.officer
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insightsengineering/teal.code
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insightsengineering/teal.data
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insightsengineering/teal.logger
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insightsengineering/teal.reporter
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insightsengineering/teal.widgets
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insightsengineering/teal.slice
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insightsengineering/tern.gee
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insightsengineering/tern.mmrm
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insightsengineering/nestcolor
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insightsengineering/roxy.shinylive
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r-cmd-non-cran:
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name: R CMD Check (non-CRAN) 🧬
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uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
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checking Rd .usage sections .* NOTE
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checking for unstated dependencies in vignettes .* NOTE
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checking top-level files .* NOTE
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deps-installation-method: setup-r-dependencies
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lookup-refs: |
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insightsengineering/teal
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insightsengineering/teal.transform
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insightsengineering/tern
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insightsengineering/rlistings
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insightsengineering/formatters
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insightsengineering/rtables
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insightsengineering/rtables.officer
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insightsengineering/teal.code
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insightsengineering/teal.data
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insightsengineering/teal.logger
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insightsengineering/teal.reporter
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insightsengineering/teal.widgets
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insightsengineering/teal.slice
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insightsengineering/tern.gee
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insightsengineering/tern.mmrm
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insightsengineering/nestcolor
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insightsengineering/roxy.shinylive
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coverage:
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name: Coverage 📔
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uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
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with:
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additional-env-vars: |
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NOT_CRAN=true
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deps-installation-method: setup-r-dependencies
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lookup-refs: |
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insightsengineering/teal
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insightsengineering/teal.transform
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insightsengineering/tern
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insightsengineering/rlistings
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insightsengineering/formatters
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insightsengineering/rtables
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insightsengineering/rtables.officer
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insightsengineering/teal.code
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insightsengineering/teal.data
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insightsengineering/teal.logger
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insightsengineering/teal.reporter
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insightsengineering/teal.widgets
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insightsengineering/teal.slice
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insightsengineering/tern.gee
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insightsengineering/tern.mmrm
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insightsengineering/nestcolor
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insightsengineering/roxy.shinylive
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linter:
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if: github.event_name != 'push'
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name: SuperLinter 🦸‍♀️
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REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
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with:
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auto-update: true
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deps-installation-method: setup-r-dependencies
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lookup-refs: |
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insightsengineering/teal
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insightsengineering/teal.transform
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insightsengineering/tern
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insightsengineering/rlistings
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insightsengineering/formatters
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insightsengineering/rtables
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insightsengineering/rtables.officer
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insightsengineering/teal.code
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insightsengineering/teal.data
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insightsengineering/teal.logger
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insightsengineering/teal.reporter
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insightsengineering/teal.widgets
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insightsengineering/teal.slice
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insightsengineering/tern.gee
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insightsengineering/tern.mmrm
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insightsengineering/nestcolor
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insightsengineering/roxy.shinylive
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gitleaks:
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name: gitleaks 💧
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uses: insightsengineering/r.pkg.template/.github/workflows/gitleaks.yaml@main

‎.github/workflows/docs.yaml‎

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with:
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default-landing-page: latest-tag
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additional-unit-test-report-directories: unit-test-report-non-cran
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deps-installation-method: setup-r-dependencies
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lookup-refs: |
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insightsengineering/teal
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insightsengineering/teal.transform
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insightsengineering/tern
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insightsengineering/rlistings
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insightsengineering/formatters
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insightsengineering/rtables
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insightsengineering/rtables.officer
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insightsengineering/teal.code
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insightsengineering/teal.data
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insightsengineering/teal.logger
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insightsengineering/teal.reporter
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insightsengineering/teal.widgets
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insightsengineering/teal.slice
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insightsengineering/tern.gee
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insightsengineering/tern.mmrm
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insightsengineering/nestcolor
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insightsengineering/roxy.shinylive

‎.github/workflows/release.yaml‎

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REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
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with:
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default-landing-page: latest-tag
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deps-installation-method: setup-r-dependencies
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lookup-refs: |
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insightsengineering/teal
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insightsengineering/teal.transform
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insightsengineering/tern
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insightsengineering/rlistings
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insightsengineering/formatters
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insightsengineering/rtables
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insightsengineering/rtables.officer
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insightsengineering/teal.code
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insightsengineering/teal.data
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insightsengineering/teal.logger
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insightsengineering/teal.reporter
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insightsengineering/teal.widgets
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insightsengineering/teal.slice
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insightsengineering/tern.gee
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insightsengineering/tern.mmrm
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insightsengineering/nestcolor
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insightsengineering/roxy.shinylive
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validation:
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name: R Package Validation report 📃
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needs: release
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uses: insightsengineering/r.pkg.template/.github/workflows/validation.yaml@main
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secrets:
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REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
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with:
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deps-installation-method: setup-r-dependencies
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lookup-refs: |
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insightsengineering/teal
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insightsengineering/teal.transform
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insightsengineering/tern
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insightsengineering/rlistings
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insightsengineering/formatters
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insightsengineering/rtables
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insightsengineering/rtables.officer
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insightsengineering/teal.code
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insightsengineering/teal.data
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insightsengineering/teal.logger
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insightsengineering/teal.reporter
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insightsengineering/teal.widgets
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insightsengineering/teal.slice
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insightsengineering/tern.gee
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insightsengineering/tern.mmrm
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insightsengineering/nestcolor
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insightsengineering/roxy.shinylive
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release:
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name: Create release 🎉
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uses: insightsengineering/r.pkg.template/.github/workflows/release.yaml@main
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checking top-level files .* NOTE
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unit-test-report-brand: >-
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https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/thumbs/teal.png
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deps-installation-method: setup-r-dependencies
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lookup-refs: |
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insightsengineering/teal
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insightsengineering/teal.transform
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insightsengineering/tern
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insightsengineering/rlistings
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insightsengineering/formatters
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insightsengineering/rtables
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insightsengineering/rtables.officer
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insightsengineering/teal.code
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insightsengineering/teal.data
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insightsengineering/teal.logger
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insightsengineering/teal.reporter
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insightsengineering/teal.widgets
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insightsengineering/teal.slice
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insightsengineering/tern.gee
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insightsengineering/tern.mmrm
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insightsengineering/nestcolor
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insightsengineering/roxy.shinylive
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coverage:
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name: Coverage 📔
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needs: [release, docs]
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with:
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additional-env-vars: |
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NOT_CRAN=true
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deps-installation-method: setup-r-dependencies
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lookup-refs: |
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insightsengineering/teal
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insightsengineering/teal.transform
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insightsengineering/tern
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insightsengineering/rlistings
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insightsengineering/formatters
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insightsengineering/rtables
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insightsengineering/rtables.officer
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insightsengineering/teal.code
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insightsengineering/teal.data
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insightsengineering/teal.logger
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insightsengineering/teal.reporter
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insightsengineering/teal.widgets
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insightsengineering/teal.slice
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insightsengineering/tern.gee
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insightsengineering/tern.mmrm
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insightsengineering/nestcolor
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insightsengineering/roxy.shinylive
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wasm:
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name: Build WASM packages 🧑‍🏭
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needs: release

‎.github/workflows/scheduled.yaml‎

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on:
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schedule:
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- cron: '45 3 * * 0'
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- cron: "45 3 * * 0"
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workflow_dispatch:
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inputs:
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chosen-workflow:
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)
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name: revdepcheck ↩️
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uses: insightsengineering/r.pkg.template/.github/workflows/revdepcheck.yaml@main
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with:
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lookup-refs: |
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insightsengineering/teal
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insightsengineering/teal.transform
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insightsengineering/tern
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insightsengineering/rlistings
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insightsengineering/formatters
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insightsengineering/rtables
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insightsengineering/rtables.officer
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insightsengineering/teal.code
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insightsengineering/teal.data
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insightsengineering/teal.logger
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insightsengineering/teal.reporter
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insightsengineering/teal.widgets
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insightsengineering/teal.slice
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insightsengineering/tern.gee
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insightsengineering/tern.mmrm
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rhub:
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if: >
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github.event_name == 'schedule' || (
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insightsengineering/teal.transform
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insightsengineering/tern
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insightsengineering/rlistings
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insightsengineering/formatters
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insightsengineering/rtables
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insightsengineering/rtables.officer
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insightsengineering/teal.code
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insightsengineering/teal.data
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insightsengineering/teal.logger
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insightsengineering/teal.reporter
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insightsengineering/teal.slice
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insightsengineering/teal.widgets
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insightsengineering/teal.slice
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insightsengineering/tern.gee
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insightsengineering/tern.mmrm

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