From 37bfd4413b773e90cd640a045454d6232565e47c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Llu=C3=ADs=20Revilla?= Date: Wed, 5 Feb 2025 10:26:05 +0100 Subject: [PATCH 01/10] Modify utils --- R/utils.R | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/R/utils.R b/R/utils.R index e92ef63bb3..c7308e2def 100644 --- a/R/utils.R +++ b/R/utils.R @@ -567,7 +567,7 @@ prepare_arm <- function(dataname, checkmate::assert_flag(compare_arm) checkmate::assert_string(ref_arm_val) checkmate::assert_flag(drop) - + message("Utils prepare_arm function is modified") data_list <- list() if (compare_arm) { From c1166651098951ef56d6f63bfef409879b3f2b32 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Llu=C3=ADs=20Revilla?= Date: Thu, 6 Feb 2025 14:21:04 +0100 Subject: [PATCH 02/10] Use branch to test ci step --- .github/workflows/check.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml index 4cbbeb68e1..f4aff7782b 100644 --- a/.github/workflows/check.yaml +++ b/.github/workflows/check.yaml @@ -21,7 +21,7 @@ jobs: uses: insightsengineering/r.pkg.template/.github/workflows/audit.yaml@main r-cmd: name: R CMD Check 🧬 - uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main + uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@b843d4ef6dae5dc942081f9e3ece59da2ef5e49e secrets: REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }} with: @@ -44,7 +44,7 @@ jobs: deps-installation-method: setup-r-dependencies r-cmd-non-cran: name: R CMD Check (non-CRAN) 🧬 - uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main + uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@b843d4ef6dae5dc942081f9e3ece59da2ef5e49e secrets: REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }} with: From 8eb1a94de0f7b268251ac31207a121052e776a28 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Llu=C3=ADs=20Revilla?= Date: Mon, 10 Feb 2025 11:55:50 +0100 Subject: [PATCH 03/10] Update SHA --- .github/workflows/check.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml index f4aff7782b..96001b360d 100644 --- a/.github/workflows/check.yaml +++ b/.github/workflows/check.yaml @@ -21,7 +21,7 @@ jobs: uses: insightsengineering/r.pkg.template/.github/workflows/audit.yaml@main r-cmd: name: R CMD Check 🧬 - uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@b843d4ef6dae5dc942081f9e3ece59da2ef5e49e + uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@cae30561c3232585c17d796e8e2299b2e501d60c secrets: REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }} with: @@ -44,7 +44,7 @@ jobs: deps-installation-method: setup-r-dependencies r-cmd-non-cran: name: R CMD Check (non-CRAN) 🧬 - uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@b843d4ef6dae5dc942081f9e3ece59da2ef5e49e + uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@cae30561c3232585c17d796e8e2299b2e501d60c secrets: REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }} with: From 167f7a0f8f7eb5ee2beaf2f967d6e6bc908402eb Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Llu=C3=ADs=20Revilla?= Date: Mon, 10 Feb 2025 12:09:03 +0100 Subject: [PATCH 04/10] Forgot to activate them --- .github/workflows/check.yaml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml index 96001b360d..89f304bda2 100644 --- a/.github/workflows/check.yaml +++ b/.github/workflows/check.yaml @@ -63,6 +63,7 @@ jobs: checking for unstated dependencies in vignettes .* NOTE checking top-level files .* NOTE deps-installation-method: setup-r-dependencies + fast-tests: true coverage: name: Coverage πŸ“” uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main @@ -72,6 +73,7 @@ jobs: additional-env-vars: | NOT_CRAN=true deps-installation-method: setup-r-dependencies + fast-tests: true linter: if: github.event_name != 'push' name: SuperLinter πŸ¦Έβ€β™€οΈ From 955c62d55068d127f625bdc92785573cba7ba637 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Llu=C3=ADs=20Revilla?= Date: Mon, 10 Feb 2025 15:38:11 +0100 Subject: [PATCH 05/10] Update latest sha --- .github/workflows/check.yaml | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml index 89f304bda2..a7f7225873 100644 --- a/.github/workflows/check.yaml +++ b/.github/workflows/check.yaml @@ -21,7 +21,7 @@ jobs: uses: insightsengineering/r.pkg.template/.github/workflows/audit.yaml@main r-cmd: name: R CMD Check 🧬 - uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@cae30561c3232585c17d796e8e2299b2e501d60c + uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@c6fa899f3903943b6019c70d23f01e6d85d69755 secrets: REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }} with: @@ -42,9 +42,10 @@ jobs: unit-test-report-brand: >- https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/thumbs/teal.png deps-installation-method: setup-r-dependencies + selected-shinytests: true r-cmd-non-cran: name: R CMD Check (non-CRAN) 🧬 - uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@cae30561c3232585c17d796e8e2299b2e501d60c + uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@c6fa899f3903943b6019c70d23f01e6d85d69755 secrets: REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }} with: @@ -63,7 +64,7 @@ jobs: checking for unstated dependencies in vignettes .* NOTE checking top-level files .* NOTE deps-installation-method: setup-r-dependencies - fast-tests: true + selected-shinytests: true coverage: name: Coverage πŸ“” uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main From 7967337e4f9eda7e1f8bcae5c92a4a3bfb45f5c5 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Llu=C3=ADs=20Revilla?= Date: Mon, 10 Feb 2025 15:39:46 +0100 Subject: [PATCH 06/10] Missed one fast-tests --- .github/workflows/check.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml index a7f7225873..1435faa8e4 100644 --- a/.github/workflows/check.yaml +++ b/.github/workflows/check.yaml @@ -74,7 +74,7 @@ jobs: additional-env-vars: | NOT_CRAN=true deps-installation-method: setup-r-dependencies - fast-tests: true + selected-shinytests: true linter: if: github.event_name != 'push' name: SuperLinter πŸ¦Έβ€β™€οΈ From ab5ae2553b05f6408a76577ec289a9278aa75fb7 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Llu=C3=ADs=20Revilla?= Date: Mon, 10 Feb 2025 15:41:14 +0100 Subject: [PATCH 07/10] Not needed at all... --- .github/workflows/check.yaml | 1 - 1 file changed, 1 deletion(-) diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml index 1435faa8e4..cd0b2f8089 100644 --- a/.github/workflows/check.yaml +++ b/.github/workflows/check.yaml @@ -74,7 +74,6 @@ jobs: additional-env-vars: | NOT_CRAN=true deps-installation-method: setup-r-dependencies - selected-shinytests: true linter: if: github.event_name != 'push' name: SuperLinter πŸ¦Έβ€β™€οΈ From 1c8b8ade18d62465f1d717c28e09504c0491cc4d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Llu=C3=ADs=20Revilla?= Date: Tue, 11 Feb 2025 10:42:56 +0100 Subject: [PATCH 08/10] update sha --- .github/workflows/check.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml index cd0b2f8089..a989be9af8 100644 --- a/.github/workflows/check.yaml +++ b/.github/workflows/check.yaml @@ -21,7 +21,7 @@ jobs: uses: insightsengineering/r.pkg.template/.github/workflows/audit.yaml@main r-cmd: name: R CMD Check 🧬 - uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@c6fa899f3903943b6019c70d23f01e6d85d69755 + uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@b6e7d636125a9b8cbe67007f77eb3386c016aeb3 secrets: REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }} with: @@ -45,7 +45,7 @@ jobs: selected-shinytests: true r-cmd-non-cran: name: R CMD Check (non-CRAN) 🧬 - uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@c6fa899f3903943b6019c70d23f01e6d85d69755 + uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@b6e7d636125a9b8cbe67007f77eb3386c016aeb3 secrets: REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }} with: From 1dc5659459fa5b6400c4b48ad6a9762196d82bf3 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Llu=C3=ADs=20Revilla?= Date: Tue, 11 Feb 2025 12:42:15 +0100 Subject: [PATCH 09/10] update sha --- .github/workflows/check.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml index a989be9af8..8dfff966ce 100644 --- a/.github/workflows/check.yaml +++ b/.github/workflows/check.yaml @@ -21,7 +21,7 @@ jobs: uses: insightsengineering/r.pkg.template/.github/workflows/audit.yaml@main r-cmd: name: R CMD Check 🧬 - uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@b6e7d636125a9b8cbe67007f77eb3386c016aeb3 + uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@934ca8e216ca934c57fdef599f979025283c3cfe secrets: REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }} with: @@ -45,7 +45,7 @@ jobs: selected-shinytests: true r-cmd-non-cran: name: R CMD Check (non-CRAN) 🧬 - uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@b6e7d636125a9b8cbe67007f77eb3386c016aeb3 + uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@934ca8e216ca934c57fdef599f979025283c3cfe secrets: REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }} with: From 9451295be76a05915ddd76b8017dfaf48263b344 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Llu=C3=ADs=20Revilla?= Date: Tue, 11 Feb 2025 15:49:45 +0100 Subject: [PATCH 10/10] update sha --- .github/workflows/check.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml index 8dfff966ce..ea9a364128 100644 --- a/.github/workflows/check.yaml +++ b/.github/workflows/check.yaml @@ -21,7 +21,7 @@ jobs: uses: insightsengineering/r.pkg.template/.github/workflows/audit.yaml@main r-cmd: name: R CMD Check 🧬 - uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@934ca8e216ca934c57fdef599f979025283c3cfe + uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@e391bb2ba6d0b1318773ff2f4dbb6c0eeaabcece secrets: REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }} with: @@ -45,7 +45,7 @@ jobs: selected-shinytests: true r-cmd-non-cran: name: R CMD Check (non-CRAN) 🧬 - uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@934ca8e216ca934c57fdef599f979025283c3cfe + uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@e391bb2ba6d0b1318773ff2f4dbb6c0eeaabcece secrets: REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }} with: