Merge branch 'main' into teal_reporter@main

Author: llrs-roche

DESCRIPTION

@@ -1,7 +1,7 @@
 Type: Package
 Package: teal.modules.general
 Title: General Modules for 'teal' Applications
-Version: 0.3.0.9071
+Version: 0.3.0.9072
 Date: 2025-01-27
 Authors@R: c(
     person("Dawid", "Kaledkowski", , "[email protected]", role = c("aut", "cre")),

NEWS.md

@@ -1,4 +1,4 @@
-# teal.modules.general 0.3.0.9071
+# teal.modules.general 0.3.0.9072
 
 * Removed `Show Warnings` modals from modules.
 * Soft deprecated `datasets_selected` argument of modules in favor of `datanames`.

R/tm_data_table.R

@@ -136,7 +136,7 @@ tm_data_table <- function(label = "Data Table",
     ui = ui_page_data_table,
     datanames = datanames,
     server_args = list(
-      datanames = datanames,
+      datanames = if (is.null(datanames)) "all" else datanames,
       variables_selected = variables_selected,
       dt_args = dt_args,
       dt_options = dt_options,
@@ -201,7 +201,8 @@ srv_page_data_table <- function(id,
 
     datanames <- Filter(function(name) {
       is.data.frame(isolate(data())[[name]])
-    }, datanames)
+    }, if (identical(datanames, "all")) names(isolate(data())) else datanames)
+
 
     output$dataset_table <- renderUI({
       do.call(

R/tm_front_page.R

@@ -72,7 +72,7 @@ tm_front_page <- function(label = "Front page",
                           additional_tags = tagList(),
                           footnotes = character(0),
                           show_metadata = deprecated(),
-                          datanames = if (missing(show_metadata)) "all" else NULL) {
+                          datanames = if (missing(show_metadata)) NULL else "all") {
   message("Initializing tm_front_page")
 
   # Start of assertions

R/tm_missing_data.R

@@ -152,11 +152,18 @@ tm_missing_data <- function(label = "Missing data",
   assert_decorators(decorators, names = available_decorators)
   # End of assertions
 
+  datanames_module <- if (identical(datanames, "all") || is.null(datanames)) {
+    datanames
+  } else {
+    union(datanames, parent_dataname)
+  }
+
   ans <- module(
     label,
     server = srv_page_missing_data,
-    datanames = if (identical(datanames, "all")) union(datanames, parent_dataname) else "all",
+    datanames = datanames_module,
     server_args = list(
+      datanames = if (is.null(datanames)) "all" else datanames,
       parent_dataname = parent_dataname,
       plot_height = plot_height,
       plot_width = plot_width,
@@ -198,18 +205,17 @@ ui_page_missing_data <- function(id, pre_output = NULL, post_output = NULL) {
 }
 
 # Server function for the missing data module (all datasets)
-srv_page_missing_data <- function(id, data, reporter, filter_panel_api, parent_dataname,
+srv_page_missing_data <- function(id, data, reporter, filter_panel_api, datanames, parent_dataname,
                                   plot_height, plot_width, ggplot2_args, ggtheme, decorators) {
   with_reporter <- !missing(reporter) && inherits(reporter, "Reporter")
   with_filter <- !missing(filter_panel_api) && inherits(filter_panel_api, "FilterPanelAPI")
   moduleServer(id, function(input, output, session) {
     teal.logger::log_shiny_input_changes(input, namespace = "teal.modules.general")
 
-    datanames <- isolate(names(data()))
-    datanames <- Filter(
-      function(name) is.data.frame(isolate(data())[[name]]),
-      datanames
-    )
+    datanames <- Filter(function(name) {
+      is.data.frame(isolate(data())[[name]])
+    }, if (identical(datanames, "all")) names(isolate(data())) else datanames)
+
     if_subject_plot <- length(parent_dataname) > 0 && parent_dataname %in% datanames
 
     ns <- session$ns

R/tm_variable_browser.R

@@ -107,8 +107,8 @@ tm_variable_browser <- function(label = "Variable Browser",
   checkmate::assert_class(ggplot2_args, "ggplot2_args")
   # End of assertions
 
-  datanames <- if (identical(datanames, "all")) {
-    "all"
+  datanames_module <- if (identical(datanames, "all") || is.null(datanames)) {
+    datanames
   } else {
     union(datanames, parent_dataname)
   }
@@ -117,9 +117,9 @@ tm_variable_browser <- function(label = "Variable Browser",
     label,
     server = srv_variable_browser,
     ui = ui_variable_browser,
-    datanames = datanames,
+    datanames = datanames_module,
     server_args = list(
-      datanames = datanames,
+      datanames = if (is.null(datanames)) "all" else datanames,
       parent_dataname = parent_dataname,
       ggplot2_args = ggplot2_args
     ),
@@ -228,7 +228,7 @@ srv_variable_browser <- function(id,
 
     datanames <- Filter(function(name) {
       is.data.frame(isolate(data())[[name]])
-    }, datanames)
+    }, if (identical(datanames, "all")) names(isolate(data())) else datanames)
 
     output$ui_variable_browser <- renderUI({
       ns <- session$ns

man/tm_front_page.Rd

@@ -8,6 +8,7 @@ app_driver_tm_front_page <- function() {
     data = data,
     modules = tm_front_page(
       label = "Front page",
+      datanames = "all",
       header_text = c(
         "Important information" = "It can go here.",
         "Other information" = "Can go here."

tests/testthat/test-shinytest2-tm_front_page.R

@@ -19,7 +19,7 @@ app_driver_tm_missing_data <- function() {
       label = "Missing data",
       plot_height = c(600, 400, 5000),
       plot_width = NULL,
-      datanames = "mtcars",
+      datanames = "all",
       ggtheme = "gray",
       ggplot2_args = list(
         "Combinations Hist" = teal.widgets::ggplot2_args(