Merge branch 'main' into 518-pkgs_imports@main

* main: (42 commits)
  [skip actions] Bump version to 0.3.0.9061
  Stop R process if AppDriver fails in `test-examples` (#820)
  [skip actions] Bump version to 0.3.0.9060
  87 remove datasets - decrease package size (#818)
  [skip actions] Bump version to 0.3.0.9059
  Fix documentation note about links on r-devel (#817)
  [skip actions] Bump version to 0.3.0.9058
  get back staged deps config (#816)
  [skip actions] Bump version to 0.3.0.9057
  add setup-r-dependencies (#815)
  [skip actions] Bump version to 0.3.0.9056
  Teal version bump (#814)
  [skip actions] Bump version to 0.3.0.9055
  🗃️ `decorators` feature branch (#795)
  [skip actions] Bump version to 0.3.0.9054
  `teal.data::datanames()` is deprecated in favor of dot-prefix and `names()` (#794)
  [skip actions] Bump version to 0.3.0.9053
  Adds `roxy.shinylive` to pre-commit configuration (#793)
  [skip actions] Bump version to 0.3.0.9052
  add rmarkdown to VignetteBuilder (#792)
  ...

Author: averissimo

.github/workflows/check.yaml

@@ -42,6 +42,22 @@ jobs:
         checking top-level files .* NOTE
       unit-test-report-brand: >-
         https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/thumbs/teal.png
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/roxy.shinylive
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/nestcolor
   r-cmd-non-cran:
     name: R CMD Check (non-CRAN) 🧬
     uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
@@ -51,12 +67,10 @@ jobs:
       additional-env-vars: |
         _R_CHECK_EXAMPLE_TIMING_THRESHOLD_=11
         TESTING_DEPTH=5
+        NOT_CRAN=true
       enforce-note-blocklist: true
-      publish-unit-test-report-gh-pages: false
-      junit-xml-comparison: false
       concurrency-group: non-cran
-      disable-unit-test-reports: true
-      skip-r-cmd-install: true
+      unit-test-report-directory: unit-test-report-non-cran
       note-blocklist: |
         checking dependencies in R code .* NOTE
         checking R code for possible problems .* NOTE
@@ -66,11 +80,46 @@ jobs:
         checking Rd .usage sections .* NOTE
         checking for unstated dependencies in vignettes .* NOTE
         checking top-level files .* NOTE
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/roxy.shinylive
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/nestcolor
   coverage:
     name: Coverage 📔
     uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
     secrets:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+    with:
+      additional-env-vars: |
+        NOT_CRAN=true
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/roxy.shinylive
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/nestcolor
   linter:
     if: github.event_name != 'push'
     name: SuperLinter 🦸‍♀️
@@ -82,6 +131,22 @@ jobs:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
     with:
       auto-update: true
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/roxy.shinylive
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/nestcolor
   gitleaks:
     name: gitleaks 💧
     uses: insightsengineering/r.pkg.template/.github/workflows/gitleaks.yaml@main

.github/workflows/docs.yaml

@@ -41,3 +41,20 @@ jobs:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
     with:
       default-landing-page: latest-tag
+      additional-unit-test-report-directories: unit-test-report-non-cran
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/roxy.shinylive
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/nestcolor

.github/workflows/on-demand.yaml

@@ -16,12 +16,43 @@ jobs:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
     with:
       default-landing-page: latest-tag
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/tern
+        insightsengineering/nestcolor
+        insightsengineering/roxy.shinylive
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
   validation:
     name: R Package Validation report 📃
     needs: release
     uses: insightsengineering/r.pkg.template/.github/workflows/validation.yaml@main
     secrets:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+    with:
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/tern
+        insightsengineering/nestcolor
+        insightsengineering/roxy.shinylive
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
   release:
     name: Create release 🎉
     uses: insightsengineering/r.pkg.template/.github/workflows/release.yaml@main
@@ -46,9 +77,47 @@ jobs:
         checking top-level files .* NOTE
       unit-test-report-brand: >-
         https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/thumbs/teal.png
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/roxy.shinylive
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/tern
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/nestcolor
   coverage:
     name: Coverage 📔
     needs: [release, docs]
     uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
     secrets:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+    with:
+      additional-env-vars: |
+        NOT_CRAN=true
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/roxy.shinylive
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/nestcolor
+  wasm:
+    name: Build WASM packages 🧑‍🏭
+    needs: release
+    uses: insightsengineering/r.pkg.template/.github/workflows/wasm.yaml@main

.github/workflows/release.yaml

@@ -3,11 +3,28 @@ name: Scheduled 🕰️
 
 on:
   schedule:
-    - cron: '45 3 * * 0'
+    - cron: "45 3 * * 0"
   workflow_dispatch:
+    inputs:
+      chosen-workflow:
+        description: |
+          Select which workflow you'd like to run
+        required: true
+        type: choice
+        default: rhub
+        options:
+          - rhub
+          - dependency-test
+          - branch-cleanup
+          - revdepcheck
 
 jobs:
   dependency-test:
+    if: >
+      github.event_name == 'schedule' || (
+        github.event_name == 'workflow_dispatch' &&
+        inputs.chosen-workflow == 'dependency-test'
+      )
     strategy:
       fail-fast: false
       matrix:
@@ -22,7 +39,60 @@ jobs:
       additional-env-vars: |
         PKG_SYSREQS_DRY_RUN=true
   branch-cleanup:
+    if: >
+      github.event_name == 'schedule' || (
+        github.event_name == 'workflow_dispatch' &&
+        inputs.chosen-workflow == 'branch-cleanup'
+      )
     name: Branch Cleanup 🧹
     uses: insightsengineering/r.pkg.template/.github/workflows/branch-cleanup.yaml@main
     secrets:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+  revdepcheck:
+    if: >
+      github.event_name == 'schedule' || (
+        github.event_name == 'workflow_dispatch' &&
+        inputs.chosen-workflow == 'revdepcheck'
+      )
+    name: revdepcheck ↩️
+    uses: insightsengineering/r.pkg.template/.github/workflows/revdepcheck.yaml@main
+    with:
+      lookup-refs: |
+        insightsengineering/roxy.shinylive
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/nestcolor
+  rhub:
+    if: >
+      github.event_name == 'schedule' || (
+        github.event_name == 'workflow_dispatch' &&
+        inputs.chosen-workflow == 'rhub'
+      )
+    name: R-hub 🌐
+    uses: insightsengineering/r.pkg.template/.github/workflows/rhub.yaml@main
+    with:
+      lookup-refs: |
+        insightsengineering/roxy.shinylive
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/nestcolor

.github/workflows/scheduled.yaml

@@ -29,3 +29,5 @@ vignettes/*.R
 coverage.*
 tests/testthat/_snaps/**/*.new.md
 tests/testthat/_snaps/**/*.new.svg
+/doc/
+/Meta/

.gitignore

@@ -1,12 +1,12 @@
 ---
 # All available hooks: https://pre-commit.com/hooks.html
 # R specific hooks: https://github.com/lorenzwalthert/precommit
-default_stages: [commit]
+default_stages: [pre-commit]
 default_language_version:
   python: python3
 repos:
   - repo: https://github.com/lorenzwalthert/precommit
-    rev: v0.4.3
+    rev: v0.4.3.9003
     hooks:
       - id: style-files
         name: Style code with `styler`
@@ -18,8 +18,6 @@ repos:
           - ggmosaic
           - ggplot2
           - shiny
-          - teal
-          - teal.transform
           - checkmate
           - dplyr
           - DT
@@ -33,6 +31,9 @@ repos:
           - shinyWidgets
           - stats
           - stringr
+          - insightsengineering/roxy.shinylive
+          - insightsengineering/teal
+          - insightsengineering/teal.transform
           - insightsengineering/teal.code
           - insightsengineering/teal.data
           - insightsengineering/teal.logger