Merge branch 'main' into test@bslib@main

Author: vedhav

.github/workflows/scheduled.yaml

@@ -66,3 +66,14 @@ jobs:
       )
     name: R-hub 🌐
     uses: insightsengineering/r.pkg.template/.github/workflows/rhub.yaml@main
+    with:
+      config: >-
+        r-patched-linux-x86_64,
+        r-release-linux-x86_64,
+        r-devel-windows-x86_64,
+        r-release-macos-arm64,
+        r-release-macos-x86_64,
+        r-release-windows-x86_64,
+        r-oldrel-macos-arm64,
+        r-oldrel-macos-x86_64,
+        r-oldrel-windows-x86_64

DESCRIPTION

@@ -1,8 +1,8 @@
 Type: Package
 Package: teal.modules.general
 Title: General Modules for 'teal' Applications
-Version: 0.3.0.9090
-Date: 2025-02-24
+Version: 0.4.0.9000
+Date: 2025-02-28
 Authors@R: c(
     person("Dawid", "Kaledkowski", , "[email protected]", role = c("aut", "cre")),
     person("Pawel", "Rucki", , "[email protected]", role = "aut"),
@@ -48,8 +48,8 @@ Imports:
     jsonlite (>= 1.8.9),
     lattice (>= 0.18-4),
     lifecycle (>= 0.2.0),
-    MASS (>= 7.3-61),
-    rtables (>= 0.6.8),
+    MASS (>= 7.3-60),
+    rtables (>= 0.6.11),
     scales (>= 1.3.0),
     shinyjs (>= 2.1.0),
     shinyTree (>= 0.2.8),
@@ -58,12 +58,12 @@ Imports:
     sparkline (>= 2.0),
     stats,
     stringr (>= 1.4.1),
-    teal.code (>= 0.6.0),
+    teal.code (>= 0.6.1),
     teal.data (>= 0.7.0),
-    teal.logger (>= 0.3.1),
+    teal.logger (>= 0.3.2),
     teal.reporter (>= 0.4.0),
     teal.widgets (>= 0.4.3),
-    tern (>= 0.9.5),
+    tern (>= 0.9.7),
     tibble (>= 2.0.0),
     tidyr (>= 0.8.3),
     tools,

NEWS.md

@@ -1,16 +1,23 @@
-# teal.modules.general 0.3.0.9090
+# teal.modules.general 0.4.0.9000
 
-* Removed `Show Warnings` modals from modules.
-* Soft deprecated `datasets_selected` argument of modules in favor of `datanames`.
-* Soft deprecated `show_metadata` argument of `tm_front_page()` in favor of `datanames`.
-* Modules' Show R Code widgets include library calls and their code is styled with `styler` package (#847, #786).
+# teal.modules.general 0.4.0
 
 ### Enhancements
+* Introduced `transformators` and `decorators` argument to modules (#863).
+* Modules' Show R Code widgets include library calls to boost reproducibility (#786).
+* Removed `Show Warnings` modals from modules.
 
+### Miscellaneous
+* Soft deprecated `datasets_selected` argument of modules in favor of `datanames`.
+* Soft deprecated `show_metadata` argument of `tm_front_page()` in favor of `datanames`.
 * Added `teal.logger` functionality for logging changes in shiny inputs in all modules.
+* All example data is now sourced from `teal.data`.
+* Update `tm_g_distribution` to not start with validation error (#823).
 
 ### Bug fixes
-* Fixed a bug in `tm_missing_data` in "Group by Subject" that was not using reactive data call.
+* Fixed a bug in `tm_missing_data` in "Group by Subject" that was not using reactive data call (#772).
+* Fixed out-of-bound labels for `tm_g_regression` (#66).
+* Fixed a bug in `tm_g_association` where the app would crash when a selected categorical variable was a factor instead of a character (#645).
 
 # teal.modules.general 0.3.0
 

R/tm_a_pca.R

@@ -20,10 +20,10 @@
 #' @section Decorating Module:
 #'
 #' This module generates the following objects, which can be modified in place using decorators:
-#' - `elbow_plot` (`ggplot2`)
-#' - `circle_plot` (`ggplot2`)
-#' - `biplot` (`ggplot2`)
-#' - `eigenvector_plot` (`ggplot2`)
+#' - `elbow_plot` (`ggplot`)
+#' - `circle_plot` (`ggplot`)
+#' - `biplot` (`ggplot`)
+#' - `eigenvector_plot` (`ggplot`)
 #'
 #' A Decorator is applied to the specific output using a named list of `teal_transform_module` objects.
 #' The name of this list corresponds to the name of the output to which the decorator is applied.
@@ -42,6 +42,9 @@
 #' ```
 #'
 #' For additional details and examples of decorators, refer to the vignette
+#' `vignette("decorate-module-output", package = "teal.modules.general")`.
+#'
+#' To learn more please refer to the vignette
 #' `vignette("transform-module-output", package = "teal")` or the [`teal::teal_transform_module()`] documentation.
 #'
 #' @examplesShinylive

R/tm_a_regression.R

@@ -46,7 +46,7 @@
 #' @section Decorating Module:
 #'
 #' This module generates the following objects, which can be modified in place using decorators:
-#' - `plot` (`ggplot2`)
+#' - `plot` (`ggplot`)
 #'
 #' A Decorator is applied to the specific output using a named list of `teal_transform_module` objects.
 #' The name of this list corresponds to the name of the output to which the decorator is applied.
@@ -62,6 +62,9 @@
 #' ```
 #'
 #' For additional details and examples of decorators, refer to the vignette
+#' `vignette("decorate-module-output", package = "teal.modules.general")`.
+#'
+#' To learn more please refer to the vignette
 #' `vignette("transform-module-output", package = "teal")` or the [`teal::teal_transform_module()`] documentation.
 #'
 #' @examplesShinylive

R/tm_g_association.R

@@ -43,6 +43,9 @@
 #' ```
 #'
 #' For additional details and examples of decorators, refer to the vignette
+#' `vignette("decorate-module-output", package = "teal.modules.general")`.
+#'
+#' To learn more please refer to the vignette
 #' `vignette("transform-module-output", package = "teal")` or the [`teal::teal_transform_module()`] documentation.
 #'
 #' @examplesShinylive

R/tm_g_bivariate.R

@@ -49,7 +49,7 @@
 #' @section Decorating Module:
 #'
 #' This module generates the following objects, which can be modified in place using decorators:
-#' - `plot` (`ggplot2`)
+#' - `plot` (`ggplot`)
 #'
 #' A Decorator is applied to the specific output using a named list of `teal_transform_module` objects.
 #' The name of this list corresponds to the name of the output to which the decorator is applied.
@@ -65,6 +65,9 @@
 #' ```
 #'
 #' For additional details and examples of decorators, refer to the vignette
+#' `vignette("decorate-module-output", package = "teal.modules.general")`.
+#'
+#' To learn more please refer to the vignette
 #' `vignette("transform-module-output", package = "teal")` or the [`teal::teal_transform_module()`] documentation.
 #'
 #'

R/tm_g_distribution.R

@@ -29,8 +29,8 @@
 #' @section Decorating Module:
 #'
 #' This module generates the following objects, which can be modified in place using decorators::
-#' - `histogram_plot` (`ggplot2`)
-#' - `qq_plot` (`ggplot2`)
+#' - `histogram_plot` (`ggplot`)
+#' - `qq_plot` (`ggplot`)
 #' - `summary_table` (`datatables` created with [DT::datatable()])
 #' - `test_table` (`datatables` created with [DT::datatable()])
 #'
@@ -51,6 +51,9 @@
 #' ```
 #'
 #' For additional details and examples of decorators, refer to the vignette
+#' `vignette("decorate-module-output", package = "teal.modules.general")`.
+#'
+#' To learn more please refer to the vignette
 #' `vignette("transform-module-output", package = "teal")` or the [`teal::teal_transform_module()`] documentation.
 #'
 #' @examplesShinylive

R/tm_g_response.R

@@ -42,7 +42,7 @@
 #' @section Decorating Module:
 #'
 #' This module generates the following objects, which can be modified in place using decorators:
-#' - `plot` (`ggplot2`)
+#' - `plot` (`ggplot`)
 #'
 #' A Decorator is applied to the specific output using a named list of `teal_transform_module` objects.
 #' The name of this list corresponds to the name of the output to which the decorator is applied.
@@ -58,6 +58,9 @@
 #' ```
 #'
 #' For additional details and examples of decorators, refer to the vignette
+#' `vignette("decorate-module-output", package = "teal.modules.general")`.
+#'
+#' To learn more please refer to the vignette
 #' `vignette("transform-module-output", package = "teal")` or the [`teal::teal_transform_module()`] documentation.
 #'
 #' @examplesShinylive

R/tm_g_scatterplot.R

@@ -33,7 +33,7 @@
 #' @section Decorating Module:
 #'
 #' This module generates the following objects, which can be modified in place using decorators:
-#' - `plot` (`ggplot2`)
+#' - `plot` (`ggplot`)
 #'
 #' A Decorator is applied to the specific output using a named list of `teal_transform_module` objects.
 #' The name of this list corresponds to the name of the output to which the decorator is applied.
@@ -49,6 +49,9 @@
 #' ```
 #'
 #' For additional details and examples of decorators, refer to the vignette
+#' `vignette("decorate-module-output", package = "teal.modules.general")`.
+#'
+#' To learn more please refer to the vignette
 #' `vignette("transform-module-output", package = "teal")` or the [`teal::teal_transform_module()`] documentation.
 #'
 #'