clean up notebooks

Author: mayofaulkner

examples/loading_data/loading_ephys_data.ipynb

@@ -8,6 +8,21 @@
     "# Loading Ephys Data (AP and LFP band)"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "81b9fe17",
+   "metadata": {
+    "nbsphinx": "hidden"
+   },
+   "outputs": [],
+   "source": [
+    "# Turn off logging, this is a hidden cell on docs page\n",
+    "import logging\n",
+    "logger = logging.getLogger('ibllib')\n",
+    "logger.setLevel(logging.CRITICAL)"
+   ]
+  },
   {
    "cell_type": "markdown",
    "id": "d82e6bf7",
@@ -48,14 +63,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "3368df3e",
-   "metadata": {
-    "execution": {
-     "iopub.execute_input": "2022-02-02T10:31:54.250698Z",
-     "iopub.status.busy": "2022-02-02T10:31:54.250698Z",
-     "iopub.status.idle": "2022-02-02T10:31:57.172533Z",
-     "shell.execute_reply": "2022-02-02T10:31:57.172533Z"
-    }
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "from one.api import ONE\n",
@@ -78,14 +86,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "1f973b85",
-   "metadata": {
-    "execution": {
-     "iopub.execute_input": "2022-02-02T10:31:57.187782Z",
-     "iopub.status.busy": "2022-02-02T10:31:57.172533Z",
-     "iopub.status.idle": "2022-02-02T10:31:57.435331Z",
-     "shell.execute_reply": "2022-02-02T10:31:57.435331Z"
-    }
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "lf_psd = one.load_object(eid, f'ephysSpectralDensityLF', collection=f'raw_ephys_data/{name}')"
@@ -132,14 +133,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "fd36e0d0",
-   "metadata": {
-    "execution": {
-     "iopub.execute_input": "2022-02-02T10:31:57.435331Z",
-     "iopub.status.busy": "2022-02-02T10:31:57.435331Z",
-     "iopub.status.idle": "2022-02-02T10:31:57.473192Z",
-     "shell.execute_reply": "2022-02-02T10:31:57.473192Z"
-    }
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "# The objects ephysTimeRms and ephysSpectralDensity contain data for all channels on the probe including the channel used\n",
@@ -164,14 +158,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "0cf30d8c",
-   "metadata": {
-    "execution": {
-     "iopub.execute_input": "2022-02-02T10:31:57.473192Z",
-     "iopub.status.busy": "2022-02-02T10:31:57.473192Z",
-     "iopub.status.idle": "2022-02-02T10:31:57.488822Z",
-     "shell.execute_reply": "2022-02-02T10:31:57.488822Z"
-    }
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "import numpy as np\n",
@@ -196,14 +183,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "67cac014",
-   "metadata": {
-    "execution": {
-     "iopub.execute_input": "2022-02-02T10:31:57.488822Z",
-     "iopub.status.busy": "2022-02-02T10:31:57.488822Z",
-     "iopub.status.idle": "2022-02-02T10:31:58.275398Z",
-     "shell.execute_reply": "2022-02-02T10:31:58.275398Z"
-    }
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "from brainbox.ephys_plots import image_lfp_spectrum_plot\n",

examples/loading_data/loading_passive_data.ipynb

@@ -8,6 +8,21 @@
     "# Loading Passive Data"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6b2485da",
+   "metadata": {
+    "nbsphinx": "hidden"
+   },
+   "outputs": [],
+   "source": [
+    "# Turn off logging, this is a hidden cell on docs page\n",
+    "import logging\n",
+    "logger = logging.getLogger('ibllib')\n",
+    "logger.setLevel(logging.CRITICAL)"
+   ]
+  },
   {
    "cell_type": "markdown",
    "id": "16345774",
@@ -52,14 +67,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "2b807296",
-   "metadata": {
-    "execution": {
-     "iopub.execute_input": "2022-02-02T10:32:00.626724Z",
-     "iopub.status.busy": "2022-02-02T10:32:00.626724Z",
-     "iopub.status.idle": "2022-02-02T10:32:03.502094Z",
-     "shell.execute_reply": "2022-02-02T10:32:03.502094Z"
-    }
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "from one.api import ONE\n",
@@ -82,14 +90,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "811e3533",
-   "metadata": {
-    "execution": {
-     "iopub.execute_input": "2022-02-02T10:32:03.502094Z",
-     "iopub.status.busy": "2022-02-02T10:32:03.502094Z",
-     "iopub.status.idle": "2022-02-02T10:32:04.800485Z",
-     "shell.execute_reply": "2022-02-02T10:32:04.800485Z"
-    }
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "from brainbox.io.one import load_passive_rfmap\n",
@@ -109,14 +110,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "c65f1ca8",
-   "metadata": {
-    "execution": {
-     "iopub.execute_input": "2022-02-02T10:32:04.800485Z",
-     "iopub.status.busy": "2022-02-02T10:32:04.800485Z",
-     "iopub.status.idle": "2022-02-02T10:32:05.171359Z",
-     "shell.execute_reply": "2022-02-02T10:32:05.171359Z"
-    }
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "# Load visual stimulus task replay events\n",
@@ -167,14 +161,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "7552f7c5",
-   "metadata": {
-    "execution": {
-     "iopub.execute_input": "2022-02-02T10:32:05.177394Z",
-     "iopub.status.busy": "2022-02-02T10:32:05.177394Z",
-     "iopub.status.idle": "2022-02-02T10:32:09.597130Z",
-     "shell.execute_reply": "2022-02-02T10:32:09.597130Z"
-    }
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "# Find first probe insertion for session\n",