Try/Catch in RawEphysQC to try both probes

Author: juhuntenburg

ibllib/ephys/ephysqc.py

@@ -110,7 +110,8 @@ def run(self, update: bool = False, overwrite: bool = True, stream: bool = None,
         if self.data.ap_meta:
             rms_file = self.probe_path.joinpath("_iblqc_ephysChannels.apRMS.npy")
             if rms_file.exists() and not overwrite:
-                _logger.warning(f'File {rms_file} already exists and overwrite=False. Skipping RMS compute.')
+                _logger.warning(f'RMS map already exists for .ap data in {self.probe_path}, skipping. '
+                                f'Use overwrite option.')
                 median_rms = np.load(rms_file)
             else:
                 rl = self.data.ap_meta.fileTimeSecs

ibllib/pipes/ephys_preprocessing.py

@@ -69,8 +69,12 @@ def _run(self, overwrite=False):
             pids = [p['id'] for p in create_alyx_probe_insertions(self.session_path, one=self.one)]
         qc_files = []
         for pid in pids:
-            eqc = ephysqc.EphysQC(pid, session_path=self.session_path, one=self.one)
-            qc_files.extend(eqc.run(update=True, overwrite=overwrite))
+            try:
+                eqc = ephysqc.EphysQC(pid, session_path=self.session_path, one=self.one)
+                qc_files.extend(eqc.run(update=True, overwrite=overwrite))
+            except AssertionError:
+                self.status = -1
+                continue
         return qc_files