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Fix imports after merge commit#
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ibllib/atlas/plots.py

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -893,10 +893,10 @@ def plot_swanson_vector(acronyms=None, values=None, ax=None, hemisphere=None, br
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if acronyms is not None:
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ibr, vals = br.propagate_down(acronyms, values)
896-
colormap = matplotlib.colormaps.get_cmap(cmap)
896+
colormap = cm.get_cmap(cmap)
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vmin = vmin or np.nanmin(vals)
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vmax = vmax or np.nanmax(vals)
899-
norm = matplotlib.colors.Normalize(vmin=vmin, vmax=vmax)
899+
norm = colors.Normalize(vmin=vmin, vmax=vmax)
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rgba_color = colormap(norm(vals), bytes=True)
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if mask is not None:
@@ -1090,7 +1090,7 @@ def plot_swanson(acronyms=None, values=None, ax=None, hemisphere=None, br=None,
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br = BrainRegions() if br is None else br
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br.compute_hierarchy()
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s2a = swanson()
1093-
# both hemishpere
1093+
# both hemispheres
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if hemisphere == 'both':
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_s2a = s2a + np.sum(br.id > 0)
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_s2a[s2a == 0] = 0
@@ -1120,7 +1120,7 @@ def plot_swanson(acronyms=None, values=None, ax=None, hemisphere=None, br=None,
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imb = np.zeros((*s2a.shape[:2], 4), dtype=np.uint8)
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# fill in the empty regions with the blank regions colours if necessary
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if iswan is not None:
1123-
imb[~iswan] = (np.array(matplotlib.colors.to_rgba(empty_color)) * 255).astype('uint8')
1123+
imb[~iswan] = (np.array(colors.to_rgba(empty_color)) * 255).astype('uint8')
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imb[s2a == 0] = 255
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# imb[s2a == 1] = np.array([167, 169, 172, 255])
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imb[s2a == 1] = np.array([0, 0, 0, 255])

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