Release v1.4.0: Clinical Intelligence & Robustness Fixes

Author: interestng

medkit/client.py

@@ -49,7 +49,7 @@ def __init__(
         if os.getenv("MEDKIT_TESTING"):
             self.cache: Any = MemoryCache()
         else:
-            self.cache: Any = DiskCache()
+            self.cache = DiskCache()
 
         # Register default providers
         self.register_provider(OpenFDAProvider(self._http_client))
@@ -301,7 +301,7 @@ def __init__(
         if os.getenv("MEDKIT_TESTING"):
             self.cache: Any = MemoryCache()
         else:
-            self.cache: Any = DiskCache()
+            self.cache = DiskCache()
 
         self.register_provider(OpenFDAProvider(self._http_client))
         self.register_provider(PubMedProvider(self._http_client))

medkit/providers/clinicaltrials.py

@@ -84,7 +84,9 @@ async def search(self, query: str, **kwargs) -> list[ClinicalTrial]:
         # Run sync version in thread to bypass httpx-specific blocking
         import asyncio
         loop = asyncio.get_event_loop()
-        return await loop.run_in_executor(None, self.search_sync, query, **kwargs)
+        return await loop.run_in_executor(
+            None, lambda: self.search_sync(query, **kwargs)
+        )
 
     def _parse_response(
         self, data: dict[str, Any], recruiting: bool | None = None

medkit/providers/openfda.py

@@ -93,8 +93,10 @@ async def check_interactions(self, drugs: list[str]) -> list[dict[str, Any]]:
                 # Using unquoted search for the second drug to allow 
                 # partial/text matches
                 queries = [
-                    f'(openfda.brand_name:"{d1}" OR openfda.generic_name:"{d1}") AND {d2}',
-                    f'(openfda.brand_name:"{d2}" OR openfda.generic_name:"{d2}") AND {d1}'
+                    f'(openfda.brand_name:"{d1}" OR '
+                    f'openfda.generic_name:"{d1}") AND {d2}',
+                    f'(openfda.brand_name:"{d2}" OR '
+                    f'openfda.generic_name:"{d2}") AND {d1}'
                 ]
                 for q in queries:
                     try:
@@ -106,9 +108,11 @@ async def check_interactions(self, drugs: list[str]) -> list[dict[str, Any]]:
                             result = data["results"][0]
                             # Try to get specific interaction text, fallback to warnings
                             evidence = result.get("drug_interactions", [""])[0] or \
-                                      result.get("warnings", ["No specific text found."])[0]
+                                      result.get("warnings", 
+                                                 ["No specific text found."])[0]
                             short_evidence = (
-                                evidence[:500] + "..." if len(evidence) > 500 else evidence
+                                evidence[:500] + "..." \
+                                if len(evidence) > 500 else evidence
                             )
 
                             interactions.append({
@@ -135,8 +139,10 @@ def check_interactions_sync(self, drugs: list[str]) -> list[dict[str, Any]]:
             for j in range(i + 1, len(drugs)):
                 d1, d2 = drugs[i], drugs[j]
                 queries = [
-                    f'(openfda.brand_name:"{d1}" OR openfda.generic_name:"{d1}") AND {d2}',
-                    f'(openfda.brand_name:"{d2}" OR openfda.generic_name:"{d2}") AND {d1}'
+                    f'(openfda.brand_name:"{d1}" OR '
+                    f'openfda.generic_name:"{d1}") AND {d2}',
+                    f'(openfda.brand_name:"{d2}" OR '
+                    f'openfda.generic_name:"{d2}") AND {d1}'
                 ]
                 for q in queries:
                     try:
@@ -147,9 +153,11 @@ def check_interactions_sync(self, drugs: list[str]) -> list[dict[str, Any]]:
                             data = response.json()
                             result = data["results"][0]
                             evidence = result.get("drug_interactions", [""])[0] or \
-                                      result.get("warnings", ["No specific text found."])[0]
+                                      result.get("warnings", 
+                                                 ["No specific text found."])[0]
                             short_evidence = (
-                                evidence[:500] + "..." if len(evidence) > 500 else evidence
+                                evidence[:500] + "..." \
+                                if len(evidence) > 500 else evidence
                             )
 
                             interactions.append({