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Just wanted to report back, I managed to solve the problem. Initial issue was caused by my rookie attempt to tar.gz the /data folder as a backup. The operation succeeded but also duplicated each asset file within database by a *.gz copy. The resulted set of files rendered the database malfunctioning.
The fix was easy, extract and delete each *.gz file within /data folder, followed by invoke update procedure.

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Answer selected by matmair
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