Rescaling during support mapping unclear #518
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bmichanderson
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Hi, I'm trying to map bootstrap support from an SVDquartets analysis. I have 100 bootstrap trees in a Nexus file (
boots_sp.tre) and I want to use them to map support onto my inferred tree (qfm_92_sp.tre). Here's the command I am using with IQ-TREE v. 2.4.0 for Linux x86 64-bit:It runs fine, but shows this output:
Reading tree qfm_92_sp.tre ... unrooted tree detected Reading input file boots_sp.tre... 100 tree(s) loaded 0 split(s) discarded because frequency <= 0.000 9 taxa and 23 splits. Rescaling split weights by -33.333 23 splits found Creating bootstrap support values... Tree with assigned support written to boots_sp.tre.suptreeIn previous runs on larger datasets (more than the 9 taxa here), I had to add
-scale 1to switch to percentages (IQ-TREE default is 100* the value). But in this case, it is dividing all support values by 3 for some reason I can't understand. I can correct it by setting-scale 3, but I'm unclear why and how to predict that value beforehand.Does anyone know what might be going on?
I'll attach the relevant files (renamed to
*.txtfor upload) for replication.boots_sp.tre.suptree.txt
qfm_92_sp.tre.txt
boots_sp.tre.txt
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