Merge develop

Author: rtburns-jpl

.mm/docker/hirsute/dev/Dockerfile

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+## -*- docker-image-name: "isce3:hirsute-dev" -*-
+
+# based on ubuntu
+FROM ubuntu:hirsute
+
+# set up some build variables
+ARG img=hirsute/dev
+ARG imghome=.mm/docker/${img}
+# locations
+ARG prefix=/usr/local
+ARG srcdir=${prefix}/src
+
+# environment
+# colorize (for fun)
+ENV TERM=xterm-256color
+# set up the dynamic linker path
+ENV LD_LIBRARY_PATH=${prefix}/lib
+
+# update the package repository
+RUN apt update -y
+# get the latest
+RUN apt dist-upgrade -y
+
+# install the base software stack
+RUN DEBIAN_FRONTEND=noninteractive \
+    apt install -y \
+    git vim unzip zip \
+    openssh-server \
+    g++ gfortran make cmake googletest \
+    libeigen3-dev \
+    libfftw3-dev libfftw3-double3 libfftw3-single3 \
+    libhdf5-openmpi-dev \
+    libgdal-dev \
+    libgsl-dev \
+    libgtest-dev \
+    libpq-dev \
+    npm \
+    nvidia-cuda-toolkit \
+    python3 python3-dev \
+    python3-distutils python3-gdal python3-h5py python3-numpy python3-pybind11 python3-pip \
+    python3-pytest python3-ruamel.yaml python3-scipy python3-shapely python3-yaml
+
+# no package for yamale
+RUN pip3 install yamale
+
+# set up the interactive environment
+# go home
+WORKDIR /root
+# copy the keybindings setup
+COPY ${imghome}/inputrc .inputrc
+# copy and prep the shell startup file
+COPY ${imghome}/bashrc bashrc.in
+RUN sed \
+    -e "s:@SRCDIR@:${srcdir}:g" \
+    bashrc.in > .bashrc
+# copy and prep the prompt
+COPY ${imghome}/prompt.py prompt.py.in
+RUN sed \
+    -e "s:@INSTANCE@:${img}:g" \
+    prompt.py.in > prompt.py
+# the pyre configuration directory
+WORKDIR /root/.pyre
+# copy and prep the {mm} coniguration file
+COPY ${imghome}/mm.yaml mm.yaml.in
+RUN sed \
+    -e "s:@PREFIX@:${prefix}:g" \
+    mm.yaml.in > mm.yaml
+# configure mm
+WORKDIR /root/.mm
+# copy and prep the configuration file
+COPY ${imghome}/config.mm config.mm
+
+# go to the source directory
+WORKDIR ${srcdir}
+
+# end of file

.mm/docker/hirsute/dev/bashrc

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+#!/bin/bash
+#
+# michael a.g. aïvázis <[email protected]>
+# (c) 1998-2021 all rights reserved
+
+# the system profile
+if [ -r /etc/profile ]; then
+    source /etc/profile
+fi
+
+# umask
+umask u+rwx,g+rwx,o+rx
+# the language/encoding
+export LANG=en_US.UTF-8
+
+# prompt
+export PROMPT_COMMAND=prompter
+
+prompter() {
+  history -a
+  export PS1="$(python3 ${HOME}/prompt.py)"
+}
+
+# aliases
+alias d='ls -ahGF'
+alias dl='ls -ahGFl'
+# git
+alias git.hash='git log --format=format:"%h" -n 1'
+alias git.branch='git rev-parse --abbrev-ref HEAD'
+alias git.status='git status --porcelain --branch --ignored'
+alias git.tag='git describe --tags --long --always'
+
+# the location of the sources
+export SRCDIR=@SRCDIR@
+# mm 4.x
+alias mm='python3 ${SRCDIR}/mm/mm.py'
+
+# end of file

.mm/docker/hirsute/dev/config.mm

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+# -*- Makefile -*-
+#
+# michael a.g. aïvázis <[email protected]>
+# (c) 1998-2021 all rights reserved
+
+
+# external dependencies
+# system tools
+sys.prefix := /usr
+sys.lib := ${sys.prefix}/lib
+sys.libx86 := ${sys.lib}/x86_64-linux-gnu
+
+# cuda
+cuda.version := 11.2
+cuda.dir := $(sys.prefix)
+cuda.libpath := $(sys.libx86)
+
+# eigen
+eigen.version := 3.3.9
+eigen.dir := $(sys.prefix)
+
+# fftw
+fftw.version := 3.3.8
+fftw.dir := $(sys.prefix)
+
+# gdal
+gdal.version := 3.2.2
+gdal.dir := $(sys.prefix)
+gdal.incpath := $(gdal.dir)/include/gdal
+
+# gsl
+gsl.version := 2.5
+gsl.dir := $(sys.prefix)
+
+# gtest
+gtest.version := 1.10
+gtest.dir := $(sys.prefix)
+
+# hdf5
+hdf5.version := 1.10.6
+hdf5.dir := $(sys.prefix)
+hdf5.incpath := $(hdf5.dir)/include/hdf5/openmpi
+hdf5.libpath := $(sys.libx86)/hdf5/openmpi
+
+# libpq
+libpq.version := 12.3
+libpq.dir := $(sys.prefix)
+libpq.libpath := $(sys.libx86)
+libpq.incpath := $(sys.prefix)/include/postgresql
+
+# mpi
+mpi.version := 4.1.0
+mpi.flavor := openmpi
+mpi.dir := $(sys.prefix)/lib/x86_64-linux-gnu/openmpi
+mpi.executive := mpirun
+
+# python
+python.version := 3.9
+python.dir := $(sys.prefix)
+
+# numpy
+numpy.version := 1.17.4
+numpy.dir := $(sys.prefix)/lib/python3/dist-packages/numpy/core
+
+# pybind11
+pybind11.version := 2.4.3
+pybind11.dir = $(sys.prefix)
+
+
+# local installs
+usr.prefix := /usr/local
+# pyre
+pyre.version := 1.9.10
+pyre.dir := $(usr.prefix)
+
+
+# install locations
+# this is necessary in order to override {mm} appending the build type to the install prefix
+builder.dest.prefix := $(project.prefix)/
+# install the pyton packages straight where they need to go
+builder.dest.pyc := $(sys.prefix)/lib/python3/dist-packages/
+
+
+# end of file

.mm/docker/hirsute/dev/inputrc

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+#!/bin/bash
+#
+# michael a.g. aïvázis <[email protected]>
+# (c) 1998-2021 all rights reserved
+
+  set editing-mode vi
+
+# end of file

.mm/docker/hirsute/dev/mm.yaml

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+# michael a.g. aïvázis <[email protected]>
+# (c) 1998-2021 all rights reserved
+
+mm:
+    # targets
+    target: debug,shared
+
+    # compilers
+    compilers:
+      - gcc
+      - nvcc
+      - python/python3
+
+    # final products
+    prefix: "@PREFIX@"
+    # intermediate build products
+    bldroot: /tmp/builds
+
+    # other settings
+    # the make utility
+    make: make
+
+# end of file