No YAML support for R3. Configuration file will remain a regular

text file for now.

Author: jshimada47

tools/imagesets/imgset.py

@@ -376,17 +376,23 @@ def workflowtest(self, wfname, testname, dataname, pyname, suf="", description="
         # distinguish between the runconfig files for each individual workflow)
         if testname.startswith("end2end"):
             inputrunconfig = f"{testname}_{wfname}{suf}.yaml"
+        elif testname.startswith("soilm"):
+            # Executable-dependent.  Currently works only for Disaggregation.
+            inputrunconfig = f"{testname}{suf}.txt"
+            shutil.copyfile(pjoin(runconfigdir, inputrunconfig),
+                            pjoin(testdir, f"runconfig_{wfname}{suf}.txt"))
         else:
             inputrunconfig = f"{testname}{suf}.yaml"
-        shutil.copyfile(pjoin(runconfigdir, inputrunconfig),
-                        pjoin(testdir, f"runconfig_{wfname}{suf}.yaml"))
+            shutil.copyfile(pjoin(runconfigdir, inputrunconfig),
+                            pjoin(testdir, f"runconfig_{wfname}{suf}.yaml"))
         log = pjoin(testdir, f"output_{wfname}{suf}", "stdouterr.log")
 
         if not testname.startswith("soilm"):
             cmd = [f"time python3 -m {pyname} {arg} runconfig_{wfname}{suf}.yaml"]
         else:
             executable = pyname
-            cmd = [f"time {executable} runconfig_{wfname}{suf}.yaml"]
+            # Executable-dependent.  Currently works only for Disaggregation.
+            cmd = [f"time {executable} runconfig_{wfname}{suf}.txt"]
 
         try:
             if not testname.startswith("soilm"):

tools/imagesets/runconfigs/soilm_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004.txt

@@ -0,0 +1,36 @@
+--Folder path to NISAR GCOV data
+input_L2_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004/NISAR_L2_PR_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004.h5
+--Folder path to ECMWF sol moisture
+input_L2_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004/ERA5_SD_TP_ST_SM.nc
+--Folder path and file to static ancillary data: EZlat200m
+input_L2_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004/ancillary/EASE2_lat200m.float32
+--Folder path and file to static ancillary data: EZlon200m
+input_L2_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004/ancillary/EASE2_lon200m.float32
+--Folder path and file to static ancillary data: EZlat1km
+input_L2_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004/ancillary/EASE2_lat01km.float32
+--Folder path and file to static ancillary data: EZlon1km
+input_L2_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004/ancillary/EASE2_lon01km.float32
+--Folder path and file to static ancillary data: EZlat3km
+input_L2_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004/ancillary/EASE2_lat03km.float32
+--Folder path and file to static ancillary data: EZlon3km
+input_L2_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004/ancillary/EASE2_lon03km.float32
+--Folder path and file to static ancillary data: EZlat9km
+input_L2_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004/ancillary/EASE2_lat09km.float32
+--Folder path and file to static ancillary data: EZlon9km
+input_L2_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004/ancillary/EASE2_lon09km.float32
+--Folder path and file to static ancillary data: Landcover1km
+input_L2_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004/ancillary/dominantIGBP_M01_B20120101_003.uint8
+--Folder path and file to static ancillary data: WaterFrac1km
+input_L2_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004/ancillary/waterfrac_M01_002.float32
+--Folder path and file to static ancillary data: WaterFrac3km
+input_L2_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004/ancillary/waterfrac_M03_002.float32
+--Folder path and file to static ancillary data: BD200m
+input_L2_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004/ancillary/BD05cmD_EASE2_200m.nc
+--Folder path and file to static ancillary data: Urban1km
+input_L2_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004/ancillary/UrbanFraction_M01_001.float32
+--Folder path and file to static ancillary data: dem1km slope
+input_L2_GCOV_001_005_A_219_4020_HH_20200926T135152_20200926T135219_P01101_M_P_001-004/ancillary/DEMSLPSTD_M01_002.float32
+--Log file name with path
+output_soilm/NISAR_SM_20200926_Disagg_ver1.log
+--Output HDF5 file name with path
+output_soilm/NISAR_SM_20200926_Disagg_ver1.h5