[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Author: pre-commit-ci[bot]

.ci/README.md

@@ -23,7 +23,7 @@ Dockerfile recipes for NISAR
 > docker-machine create dev --driver virtualbox
 ```
 
-This will take a while to run and will build a small VM. Once, you have this - you are ready to start. You can verify that your "dev" instance is running with 
+This will take a while to run and will build a small VM. Once, you have this - you are ready to start. You can verify that your "dev" instance is running with
 
 ```bash
 > docker-machine ls
@@ -45,9 +45,9 @@ Every time you login / restart, you will need set appropriate environment variab
 > eval "$(docker-machine env dev)"
 ```
 
-Add this to your modules or a startup script for docker. 
+Add this to your modules or a startup script for docker.
 
-You can test that docker is properly setup now by testing 
+You can test that docker is properly setup now by testing
 
 ```bash
 docker run hello-world
@@ -67,7 +67,7 @@ The following command will build a container tagged "centosbase:v0" from the rec
 
 Confirm that this got created with
 ```bash
->docker image ls 
+>docker image ls
 ```
 
 ## How to connect to a container
@@ -87,7 +87,7 @@ After closing the shell, dont forget to clean up the instance that was created f
 > docker ps -a
 ```
 
-2. Remove the instance 
+2. Remove the instance
 
 ```bash
 > docker rm idfromprevcmd
@@ -96,7 +96,7 @@ After closing the shell, dont forget to clean up the instance that was created f
 ## Shutting down docker
 ------------
 
-To shut down the VM running docker 
+To shut down the VM running docker
 
 ```bash
 > docker-machine stop dev

.ci/images/centos/Dockerfile.isce-ops-qa

@@ -6,7 +6,6 @@ ENV LANG en_US.UTF-8
 # copy QA repo
 COPY . /opt/QualityAssurance
 
-# Setup test directory   
+# Setup test directory
 RUN set -ex \
   && source /opt/docker/bin/entrypoint_source
-

.ci/images/centos/Dockerfile.isce-src

@@ -18,7 +18,7 @@ RUN set -ex \
  && source /home/conda/.rvm/scripts/rvm \
  && sudo /home/conda/.rvm/bin/rvm install 2.3.0 \
  && export PATH=/home/conda/.rvm/gems/ruby-2.3.0/bin:/home/conda/.rvm/gems/ruby-2.3.0@global/wrappers/:$PATH \
- && sudo gem install --no-ri --no-rdoc fpm 
+ && sudo gem install --no-ri --no-rdoc fpm
 
 # install doxygen and sphinx for doc generation;
 # install valgrind for memory leak check

.ci/images/centos/Dockerfile.profile

@@ -6,9 +6,8 @@ ENV LANG en_US.UTF-8
 # copy WorkflowProfile repo
 COPY . /opt/WorkflowProfile
 
-# Setup test directory   
+# Setup test directory
 RUN set -ex \
   && source /opt/docker/bin/entrypoint_source \
   && mkdir /home/conda/test \
-  && cd /home/conda/test 
-
+  && cd /home/conda/test

.ci/images/centos/README.md

@@ -73,4 +73,3 @@ or
 ```
 docker run -u $ID:$(id -g) nisar/isce-ops:<tag>
 ```
-

.ci/images/centos/build-all.sh

@@ -38,20 +38,18 @@ echo WFPROFILE: $WFPROFILE
 pushd ${ISCE}/.ci/images/centos
 if [ -n "${GCCTAR+set}" ]; then
   cp ${GCCTAR} .  # needed by build-dev.sh
-fi  
+fi
 ./build-base.sh ${TAG}
 ./build-dev.sh ${TAG}
-./build-isce-src.sh ${TAG} ${ISCE} 
+./build-isce-src.sh ${TAG} ${ISCE}
 ./build-isce-ops.sh ${TAG} ${ISCE}
 
 # build ISCE3 image including QA software
-if [ -n "${QA+set}" ]; then 
+if [ -n "${QA+set}" ]; then
   ./build-isce-ops-qa.sh ${TAG} ${ISCE} ${QA}
 fi
 
 # build workflow profile software in image
 if [ -n "${WFPROFILE+set}" ]; then
   ./build-profile.sh ${TAG} ${ISCE} ${WFPROFILE}
 fi
-
-

.ci/images/centos/run-profile.sh

@@ -24,9 +24,9 @@ docker run \
   --mount type=bind,source=${DATA},target=${CONTAINER_DATADIR} \
   --name ${CONTAINERTAG} ${IMAGE}:${TAG} \
   /bin/bash -c "source /opt/docker/bin/entrypoint_source &&
-                echo ${CONTAINER_DATADIR}: && 
-                ls -al ${CONTAINER_DATADIR} && 
-                cd ${CONTAINER_TESTDIR} && 
+                echo ${CONTAINER_DATADIR}: &&
+                ls -al ${CONTAINER_DATADIR} &&
+                cd ${CONTAINER_TESTDIR} &&
                 python3 /opt/WorkflowProfile/WorkflowProfile/workflowprofile.py $CONTAINER_DATADIR/profile_runs.yaml &&
                 mv profile_interferogram_*.yaml results.pickle profile_runs"
 
@@ -36,5 +36,3 @@ docker cp ${CONTAINERTAG}:/home/conda/test/profile_runs .
 
 ###Delete the container
 docker rm ${CONTAINERTAG}
-
-

.ci/images/centos/run-qa.sh

@@ -13,7 +13,7 @@ DATA=$4    # must be inside DATADIR directory
 IMAGE=nisar/isce-ops-qa
 
 CONTAINERTAG=qa-${TAG}
-CONTAINER_DATADIR=/home/conda/data 
+CONTAINER_DATADIR=/home/conda/data
 
 echo "IMAGE is $IMAGE"
 echo "IMAGE TAG is $TAG"

.ci/jenkins/build-test-deploy/Jenkinsfile

@@ -27,11 +27,11 @@ pipeline {
       agent any
       steps {
         //checkout ([
-        //  $class: 'GitSCM', 
-        //  branches: [[name: '*/develop']], 
-        //  doGenerateSubmoduleConfigurations: false, 
-        //  extensions: [[$class: 'WipeWorkspace']], 
-        //  submoduleCfg: [], 
+        //  $class: 'GitSCM',
+        //  branches: [[name: '*/develop']],
+        //  doGenerateSubmoduleConfigurations: false,
+        //  extensions: [[$class: 'WipeWorkspace']],
+        //  submoduleCfg: [],
         //  userRemoteConfigs: [[url: '[email protected]:isce-3/isce.git']]
         //])
 
@@ -49,7 +49,7 @@ pipeline {
         }
       }
     }
-  } 
+  }
   post {
     always {
       echo "Cleaning up workspace"

.ci/jenkins/workflow-mintests/Jenkinsfile

@@ -130,7 +130,7 @@ pipeline {
     }
     unstable {
       echo 'I am unstable :/ Emailing PR author and one of the ISCE3 maintainers.'
-      emailStatus()      
+      emailStatus()
     }
     failure {
       echo 'I failed :( Emailing PR author and one of the ISCE3 maintainers.'
@@ -145,11 +145,10 @@ pipeline {
 def emailStatus() {
       mail to: '[email protected]',
           subject: "ISCE3 build ${currentBuild.result}: ${currentBuild.fullDisplayName}",
-          body: "Minimum workflow test ${currentBuild.result}: ${env.BUILD_URL}" 
+          body: "Minimum workflow test ${currentBuild.result}: ${env.BUILD_URL}"
       emailext(
           subject: "ISCE3 build ${currentBuild.result}: ${currentBuild.fullDisplayName}",
           body: "Minimum workflow test ${currentBuild.result}: ${env.BUILD_URL}",
           recipientProviders: [[$class: 'DevelopersRecipientProvider']]
       )
 }
-