pyauthenticator/.github/workflows/pipeline.yml at fe597ebffd9ecdbf314b9772dffe1b1afdf7e716 · jan-janssen/pyauthenticator · GitHub

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name: Pipeline

on:
  push:
    branches: [ main ]
  pull_request:

jobs:
  black:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
    - uses: psf/black@stable
      with:
        options: "--check --diff"
        src: ./src/${{ github.event.repository.name }}

  black_fix:  # in most cases pre-commit is faster
    needs: [black]
    if: failure()
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
      with:
        token: ${{ secrets.DEPENDABOT_WORKFLOW_TOKEN }}
        ref: ${{ github.event.pull_request.head.ref }} # Check out the head of the actual branch, not the PR
        fetch-depth: 0 # otherwise, you will fail to push refs to dest repo
    - name: format black
      uses: psf/black@stable
      with:
        options: ""
        src: "./src/${{ github.event.repository.name }}"
    - name: commit
      run: |
        git config --local user.email "pyiron@mpie.de"
        git config --local user.name "pyiron-runner"
        git commit -m "Format black" -a
    - name: push
      uses: ad-m/github-push-action@master
      with:
        github_token: ${{ secrets.DEPENDABOT_WORKFLOW_TOKEN }}
        branch: ${{ github.event.pull_request.head.ref }}

  mypy:
    needs: [black]
    runs-on: ubuntu-latest
    steps:
      - name: Setup Python
        uses: actions/setup-python@v5
        with:
          python-version: "3.14"
          architecture: x64
      - name: Checkout
        uses: actions/checkout@v4
      - name: Install mypy
        run: pip install mypy
      - name: Test
        run: mypy --ignore-missing-imports src/${{ github.event.repository.name }}

  pip_check:
    needs: [black]
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
    - name: Conda config
      run: echo -e "channels:\n  - conda-forge\n" > .condarc
    - uses: conda-incubator/setup-miniconda@v3
      with:
        python-version: "3.14"
        miniforge-version: latest
        condarc-file: .condarc
        environment-file: .ci_support/environment.yml
    - name: Setup
      shell: bash -l {0}
      run: |
        pip install tomlkit
        pip install . --no-deps --no-build-isolation
        pip check

  unittest:
    needs: [black]
    runs-on: ${{ matrix.operating-system }}
    strategy:
      matrix:
        operating-system: [ubuntu-latest, macos-latest]
        python-version: ['3.10', '3.11', '3.12', '3.13', '3.14']
    steps:
    - uses: actions/checkout@v4
    - name: Conda config
      shell: bash -l {0}
      run: echo -e "channels:\n  - conda-forge\n" > .condarc
    - uses: conda-incubator/setup-miniconda@v3
      with:
        python-version: ${{ matrix.python-version }}
        miniforge-version: latest
        condarc-file: .condarc
        environment-file: .ci_support/environment.yml
    - name: Test
      shell: bash -l {0}
      run: |
        pip install --no-deps .
        coverage run

  coverage:
    needs: [black]
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
    - name: Conda config
      shell: bash -l {0}
      run: echo -e "channels:\n  - conda-forge\n" > .condarc
    - uses: conda-incubator/setup-miniconda@v3
      with:
        python-version: '3.14'
        miniforge-version: latest
        condarc-file: .condarc
        environment-file: .ci_support/environment.yml
    - name: Test
      shell: bash -l {0}
      run: |
        pip install --no-deps .
        coverage run
        coverage report
        coverage xml
    - name: Coveralls
      uses: coverallsapp/github-action@v2

  notebooks:
    needs: [black]
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - name: Merge Notebook environment
        run: |
          cp .ci_support/environment.yml environment.yml
          tail --lines=+4 .ci_support/environment-notebooks.yml >> environment.yml
      - name: Conda config
        shell: bash -l {0}
        run: echo -e "channels:\n  - conda-forge\n" > .condarc
      - name: Setup Mambaforge
        uses: conda-incubator/setup-miniconda@v3
        with:
          python-version: '3.14'
          miniforge-version: latest
          condarc-file: .condarc
          environment-file: environment.yml
      - name: Install
        shell: bash -l {0}
        run: pip install . --no-deps --no-build-isolation
      - name: Notebooks
        shell: bash -l {0}
        timeout-minutes: 5
        run: |
          cp -r docs/images .
          papermill docs/technology.ipynb docs/technology-out.ipynb -k python3
          papermill docs/implementation.ipynb docs/implementation-out.ipynb -k python3