[New Module]: esci for jasp

[gdcumming]

JASP Version

0.19.0

Commit ID

JASP msi uploaded 10:44 23-07-2024

JASP Module

Unrelated

What analysis are you seeing the problem on?

No response

What OS are you seeing the problem on?

Windows 10

Bug Description

Following advice from R Calin-Jageman, who is developing esci to use inside JASP, I downloaded and installed yesterday's nightlie JASP msi. Run JASP: all seems fine. (I had uninstalled, deleted, any earlier traces of JASP.)
I then checked to see R Console and typed 'sessionInfo()' but rec'd error message 'cannot change working directory' as in screenshot
Same result whether I ran JASP as administrator for my PC, or not.

Expected Behaviour

Wanted to be able to install a Module (esci)

Steps to Reproduce

1. Instal and run JASP
2. Check R Console
3. Type 'sessionInfo()'

Log (if any)

No response

Final Checklist

• I have included a screenshot showcasing the issue, if possible.
• I have included a JASP file (zipped) or data file that causes the crash/bug, if applicable.
• I have accurately described the bug, and steps to reproduce it.

[tomtomme]

Thx @gdcumming for the report! I love your book by the way :D
The error should certainly be adressed, but if you want to install a dev module in jasp, you usually would not do that via an R terminal.
Look here on how to install a dev-module: https://github.com/jasp-stats/jasp-desktop/blob/stable/Docs/development/jasp-module-workflow.md

In short:
If you have already downlaoded esci for JASP from github, first make sure, that the package is a .tar.gz archive. If it is a .zip you need to repackage it to said format.

Then to install the esci module in JASP:

1. Open JASP
2. Click on the plus symbol in the top right corner
3. Click on Install Developer Module and select the .tar.gz
4. Then wait patiently while the module is build and hope that it succeeds!

If you can point me to the esci repository on github I would be delighted to also test the module so that we could share our experience (and bug reports) here :D

@shun2wang
Do you have an idea what this error message is about?

While gdcumming is on the latest nightly, I am on flatpak 0.19 stable and get no error:

sessionInfo()
R version 4.4.1 (2024-06-14)
Platform: x86_64-pc-linux-gnu
Running under: KDE Flatpak runtime

Matrix products: default
BLAS:   /app/lib64/R/lib/libRblas.so 
LAPACK: /app/lib64/R/lib/libRlapack.so;  LAPACK version 3.12.0

locale:
 [1] LC_CTYPE=de_DE.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=de_DE.UTF-8        LC_COLLATE=de_DE.UTF-8    
 [5] LC_MONETARY=de_DE.UTF-8    LC_MESSAGES=de_DE.UTF-8   
 [7] LC_PAPER=de_DE.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C       

time zone: Europe/Berlin
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] jaspDescriptives_0.19.0 jaspBase_0.19.0         Rcpp_1.0.12            

loaded via a namespace (and not attached):
 [1] vctrs_0.6.5       cli_3.6.3         rlang_1.1.4       generics_0.1.3   
 [5] textshaping_0.4.0 glue_1.7.0        colorspace_2.1-0  gridExtra_2.3    
 [9] ragg_1.3.2        scales_1.3.0      fansi_1.0.6       grid_4.4.1       
[13] munsell_0.5.1     tibble_3.2.1      lifecycle_1.0.4   compiler_4.4.1   
[17] dplyr_1.1.4       codetools_0.2-20  pkgconfig_2.0.3   systemfonts_1.1.0
[21] R6_2.5.1          tidyselect_1.2.1  utf8_1.2.4        pillar_1.9.0     
[25] jaspGraphs_0.19.0 magrittr_2.0.3    gtable_0.3.5      ggplot2_3.5.1   

[shun2wang]

JASP msi uploaded 10:44 23-07-2024

I cannot find this upload...

but yes, it not loaded in welcome page explicitly, but if you change the analysis in the drop-down and it will load them.

[gdcumming]

Thomas, Thanks! We're dead keen to get Bob's wonderful new esci into JASP, as well as R-standalone and jamovi. I have rtools44 installed. I've been trying to install (also attached): jaspesci_0.1.0.tar.gz If I choose 'select a developer module' it fails to see that file. If I choose 'install module' I can see and select that file. Install, pause, see error below. I get the above 2 results with 'R console' checked, also when not checked. The github link you request. Would it be this: https://github.com/rcalinjageman/esci/releases/tag/1.0.3 Sorry, way out of my (v shallow) R depth! Geoff [cid:d841212e-286e-48e7-8056-3dbed47735ff] [cid:feabe853-0486-4cdb-96f0-0a30ce3b9066] Book information and blog: www.thenewstatistics.com<http://www.thenewstatistics.com> X: @TheNewStats New esci software: https://thenewstatistics.com/itns/esci/jesci/ Order the new intro book on Amazon<https://www.amazon.com/Introduction-New-Statistics-Estimation-Science/dp/036753150X>. Instructors can request a free desk copy here<https://www.routledge.com/textbooks/evaluation/9781032689470>. Geoff: W: https://scholars.latrobe.edu.au/gdcumming E: ***@***.******@***.***>

…

________________________________ From: Thomas Langkamp ***@***.***> Sent: Thursday, 25 July 2024 10:21 PM To: jasp-stats/jasp-issues ***@***.***> Cc: Geoff Cumming ***@***.***>; Mention ***@***.***> Subject: Re: [jasp-stats/jasp-issues] [Bug]: Cannot change working directory (Issue #2842) Thx @gdcumming<https://github.com/gdcumming> for the report! I love your book by the way :D The error should certainly be adressed, but if you want to install a dev module in jasp, you usually would not do that via an R terminal. Look here on how to install a dev-module: https://github.com/jasp-stats/jasp-desktop/blob/stable/Docs/development/jasp-module-workflow.md<https://github.com/jasp-stats/jasp-desktop/blob/stable/Docs/development/jasp-module-workflow.md> In short: If you have already downlaoded esci for JASP from github, first make sure, that the package is a .tar.gz archive. If it is a .zip you need to repackage it to said format. Then to install the esci module in JASP: * Open JASP * Click on the plus symbol in the top right corner * Click on Install Developer Module and select the .tar.gz * Then wait patiently while the module is build and hope that it succeeds! If you can point me to the esci repository on github I would be delighted to also test the module so that we could share our experience (and bug reports) here :D Those @shun2wang<https://github.com/shun2wang> Do you have an idea what this error message is about? — Reply to this email directly, view it on GitHub<#2842 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ANFVLUENBMRC2YIBK7536I3ZODUUXAVCNFSM6AAAAABLNR4F5WVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDENJQGE4TCOJWGM>. You are receiving this because you were mentioned.Message ID: ***@***.***> La Trobe University | TEQSA PRV12132 - Australian University | CRICOS Provider 00115M

[tomtomme]

"see error below"

Geoff, did you attach a screenshot with said error via email? Sadly those cannot be seen her on github. Please drag and drop the ereor message directly via github.com in the browser,

thx for the other hints and the link. Will check out if I can reproduce the error in the next days.

[tomtomme]

So I tested esci 1.0.3 tar.gz from the link you provided on JASP 0.19 stable flatpak (currently no newer flatpak beta available). And I can confirm that installing esci through the "install module" button does not work. It crahes JASP completely with:

flatpak run --branch=stable --devel org.jaspstats.JASP
Desktop:        QML cache directory: /home/tom/.var/app/org.jaspstats.JASP/cache/JASP/JASP/qmlcache_78d4157f08e81b1ea48ebe2f8f1a054b1ed563f0
Making new argument list for Application startup: JASP
Starting JASP 0.19 from commit 78d4157f08e81b1ea48ebe2f8f1a054b1ed563f0 and branch HEAD
QtWebEngineQuick initialized
Application initialized
Application init entered
MainWindow constructor started
TempFiles::createSessionDir(): '/home/tom/.JASP/temp/3' about to be (removed and re)created.
Going to construct the necessary models for JASP to function.
Desktop:        Checking qm file: /app/Resources/Translations/jaspDesktop-tr.qm
Desktop:        Invalid translation file found with name: jaspDesktop-tr.qm
Desktop:        Checking qm file: /app/Resources/Translations/jaspDesktop-ru.qm
Desktop:        Language (Russian) not registered in LanguageModel, adding it now
Desktop:        Checking qm file: /app/Resources/Translations/jaspDesktop-es.qm
Desktop:        Language (Spanish) not registered in LanguageModel, adding it now
Desktop:        Checking qm file: /app/Resources/Translations/jaspDesktop-pt_BR.qm
Desktop:        Invalid translation file found with name: jaspDesktop-pt_BR.qm
Desktop:        Checking qm file: /app/Resources/Translations/jaspDesktop-zh_Hans.qm
Desktop:        Language (Chinese) not registered in LanguageModel, adding it now
Desktop:        Checking qm file: /app/Resources/Translations/jaspDesktop-ja.qm
Desktop:        Language (Japanese) not registered in LanguageModel, adding it now
Desktop:        Checking qm file: /app/Resources/Translations/jaspDesktop-fr.qm
Desktop:        Language (French) not registered in LanguageModel, adding it now
Desktop:        Checking qm file: /app/Resources/Translations/jaspDesktop-nl.qm
Desktop:        Language (Dutch) not registered in LanguageModel, adding it now
Desktop:        Checking qm file: /app/Resources/Translations/jaspDesktop-zh_Hant.qm
Desktop:        Language (Chinese) not registered in LanguageModel, adding it now
Desktop:        Checking qm file: /app/Resources/Translations/jaspDesktop-pl.qm
Desktop:        Language (Polish) not registered in LanguageModel, adding it now
Desktop:        Checking qm file: /app/Resources/Translations/jaspDesktop-de.qm
Desktop:        Language (German) not registered in LanguageModel, adding it now
Desktop:        Checking qm file: /app/Resources/Translations/jaspDesktop-it.qm
Desktop:        Language (Italian) not registered in LanguageModel, adding it now
Desktop:        Checking qm file: /app/Resources/Translations/jaspDesktop-id.qm
Desktop:        Language (Indonesian) not registered in LanguageModel, adding it now
Desktop:        Checking qm file: /app/Resources/Translations/jaspDesktop-gl.qm
Desktop:        Language (Galician) not registered in LanguageModel, adding it now
Desktop:        Checking qm file: /app/Resources/Translations/jaspDesktop-pt.qm
Desktop:        Language (Portuguese) not registered in LanguageModel, adding it now
Desktop:        Checking qm file: /app/Resources/Translations/jaspDesktop-eo.qm
Desktop:        Invalid translation file found with name: jaspDesktop-eo.qm
Desktop:        loadQmFile(/app/bin/../Resources/Translations/jaspDesktop-de.qm)
Desktop:        Opened internal sqlite database for creation at '/home/tom/.JASP/temp/3/internal.sqlite'.
Desktop:        DataSet::DataSet(index=-1)
Desktop:        DataSetPackage::reset()
Desktop:        DataSet::DataSet(index=-1)
Desktop:        DataSetPackage::endLoadingData
Entering eventloop
Error in loadNamespace(x) : es gibt kein Paket namens ‘jaspBase’
Error in loadNamespace(x) : es gibt kein Paket namens ‘jaspBase’
kf.solid.backends.udisks2: Failed enumerating UDisks2 objects: "org.freedesktop.DBus.Error.Disconnected" 
 "Not connected to D-Bus server"
kf.solid.backends.udisks2: Failed enumerating UDisks2 objects: "org.freedesktop.DBus.Error.Disconnected" 
 "Not connected to D-Bus server"
kf.solid.backends.udisks2: Failed enumerating UDisks2 objects: "org.freedesktop.DBus.Error.Disconnected" 
 "Not connected to D-Bus server"
kf.solid.backends.udisks2: Failed enumerating UDisks2 objects: "org.freedesktop.DBus.Error.Disconnected" 
 "Not connected to D-Bus server"
kf.solid.backends.udisks2: Failed enumerating UDisks2 objects: "org.freedesktop.DBus.Error.Disconnected" 
 "Not connected to D-Bus server"
kf.solid.backends.udisks2: Failed enumerating UDisks2 objects: "org.freedesktop.DBus.Error.Disconnected" 
 "Not connected to D-Bus server"
kf.solid.backends.udisks2: Failed enumerating UDisks2 objects: "org.freedesktop.DBus.Error.Disconnected" 
 "Not connected to D-Bus server"
kf.solid.backends.udisks2: Failed enumerating UDisks2 objects: "org.freedesktop.DBus.Error.Disconnected" 
 "Not connected to D-Bus server"
Qt has caught an exception thrown from an event handler. Throwing
exceptions from an event handler is not supported in Qt.
You must not let any exception whatsoever propagate through Qt code.
Uncaught std::exception! Was: std::exception
Object 0x56039dee5550 destroyed while one of its QML signal handlers is in progress.
Most likely the object was deleted synchronously (use QObject::deleteLater() instead), or the application is running a nested event loop.
This behavior is NOT supported!
qrc:/components/JASP/Widgets/ModulesMenu.qml:189: function() { [native code] }
/app/bin/org.jaspstats.JASP: Zeile 10:     3 Abgebrochen             (Speicherabzug geschrieben) JASP

Would still be cool, if you could upload the error that you get here.

[gdcumming]

Now with error screenshot attached

…

________________________________ From: Geoff Cumming ***@***.***> Sent: Friday, 26 July 2024 3:20 PM To: jasp-stats/jasp-issues ***@***.***>; jasp-stats/jasp-issues ***@***.***> Cc: Mention ***@***.***>; Calin-Jageman, Robert ***@***.***> Subject: Re: [jasp-stats/jasp-issues] [Bug]: Cannot change working directory (Issue #2842) Thomas, Thanks! We're dead keen to get Bob's wonderful new esci into JASP, as well as R-standalone and jamovi. I have rtools44 installed. I've been trying to install (also attached): jaspesci_0.1.0.tar.gz If I choose 'select a developer module' it fails to see that file. If I choose 'install module' I can see and select that file. Install, pause, see error below. I get the above 2 results with 'R console' checked, also when not checked. The github link you request. Would it be this: https://github.com/rcalinjageman/esci/releases/tag/1.0.3 Sorry, way out of my (v shallow) R depth! Geoff [cid:d841212e-286e-48e7-8056-3dbed47735ff] [cid:feabe853-0486-4cdb-96f0-0a30ce3b9066] Book information and blog: www.thenewstatistics.com<http://www.thenewstatistics.com> X: @TheNewStats New esci software: https://thenewstatistics.com/itns/esci/jesci/ Order the new intro book on Amazon<https://www.amazon.com/Introduction-New-Statistics-Estimation-Science/dp/036753150X>. Instructors can request a free desk copy here<https://www.routledge.com/textbooks/evaluation/9781032689470>. Geoff: W: https://scholars.latrobe.edu.au/gdcumming E: ***@***.******@***.***>

________________________________ From: Thomas Langkamp ***@***.***> Sent: Thursday, 25 July 2024 10:21 PM To: jasp-stats/jasp-issues ***@***.***> Cc: Geoff Cumming ***@***.***>; Mention ***@***.***> Subject: Re: [jasp-stats/jasp-issues] [Bug]: Cannot change working directory (Issue #2842) Thx @gdcumming<https://github.com/gdcumming> for the report! I love your book by the way :D The error should certainly be adressed, but if you want to install a dev module in jasp, you usually would not do that via an R terminal. Look here on how to install a dev-module: https://github.com/jasp-stats/jasp-desktop/blob/stable/Docs/development/jasp-module-workflow.md<https://github.com/jasp-stats/jasp-desktop/blob/stable/Docs/development/jasp-module-workflow.md> In short: If you have already downlaoded esci for JASP from github, first make sure, that the package is a .tar.gz archive. If it is a .zip you need to repackage it to said format. Then to install the esci module in JASP: * Open JASP * Click on the plus symbol in the top right corner * Click on Install Developer Module and select the .tar.gz * Then wait patiently while the module is build and hope that it succeeds! If you can point me to the esci repository on github I would be delighted to also test the module so that we could share our experience (and bug reports) here :D Those @shun2wang<https://github.com/shun2wang> Do you have an idea what this error message is about? — Reply to this email directly, view it on GitHub<#2842 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ANFVLUENBMRC2YIBK7536I3ZODUUXAVCNFSM6AAAAABLNR4F5WVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDENJQGE4TCOJWGM>. You are receiving this because you were mentioned. La Trobe University | TEQSA PRV12132 - Australian University | CRICOS Provider 00115M