[Bug]: SEM model

[panosgl]

JASP Version

0.19.0

Commit ID

No response

JASP Module

SEM

What analysis are you seeing the problem on?

SEM

What OS are you seeing the problem on?

macOS Intel

Bug Description

This analysis terminated unexpectedly.

Error in if (nrow(originalSyntaxTable[originalSyntaxTable$op = ':=', : argument is of length zero

Stack trace
tryCatchOne(expr, names, parentenv, handlers[[1]])

doTryCatch(return(expr), name, parentenv, handler)

withCallingHandlers(expr = analysis(jaspResults = jaspResults, dataset = dataset, options = options), error = .addStackTrace)

analysis(jaspResults = jaspResults, dataset = dataset, options = options)

.semParameters(modelContainer, dataset, options, ready)

.semParameterTables(modelContainer[['results']][['object']][[1]], NULL, params, options, ready, modelContainer, dataset)

To receive assistance with this problem, please report the message above at: https://jasp-stats.org/bug-reports

Expected Behaviour

latent variables

CIQ =~ CIQ_1 + CIQ_2 + CIQ_3 + CIQ_4 + CIQ_5 + CIQ_6 + CIQ_7 + CIQ_8 + CIQ_9
Avoidant_Style =~ RD12_1 + RD12_3 + RD12_4 + RD12_8 + RD12_10 + RD12_11
Credulity =~ ETS_7 + ETS_8 + ETS_14
Mistrust =~ ETS_3 + ETS_4 + ETS_5 + ETS_6 + ETS_11 + ETS_12 + ETS_13
PTSD_DSM =~ PTSD_1 + PTSD_2 + PTSD_3 + PTSD_4 + PTSD_5 + PTSD_6 + PTSD_7 + PTSD_8 + PTSD_9 + PTSD_10 + PTSD_11 + PTSD_12 + PTSD_13 + PTSD_14 + PTSD_15 + PTSD_16 + PTSD_17

regressions

Avoidant_Style ~ CIQ
Credulity ~ Avoidant_Style
Mistrust ~ Avoidant_Style
PTSD_DSM ~ CIQ + Avoidant_Style + Credulity + Mistrust

residual (co)variances

Credulity ~~ Mistrust

Steps to Reproduce

pSem::SEM(
version = "0.19",
models = list(list(name = "Model 1", syntax = list(columns = list("JaspColumn_19_Encoded", "JaspColumn_20_Encoded", "JaspColumn_21_Encoded", "JaspColumn_22_Encoded", "JaspColumn_23_Encoded", "JaspColumn_24_Encoded", "JaspColumn_25_Encoded", "JaspColumn_26_Encoded", "JaspColumn_27_Encoded", "JaspColumn_103_Encoded", "JaspColumn_104_Encoded", "JaspColumn_105_Encoded", "JaspColumn_106_Encoded", "JaspColumn_95_Encoded", "JaspColumn_96_Encoded", "JaspColumn_97_Encoded", "JaspColumn_98_Encoded", "JaspColumn_99_Encoded", "JaspColumn_100_Encoded", "JaspColumn_160_Encoded", "JaspColumn_128_Encoded", "JaspColumn_137_Encoded", "JaspColumn_138_Encoded", "JaspColumn_139_Encoded", "JaspColumn_140_Encoded", "JaspColumn_141_Encoded", "JaspColumn_142_Encoded", "JaspColumn_143_Encoded", "JaspColumn_144_Encoded", "JaspColumn_129_Encoded", "JaspColumn_130_Encoded", "JaspColumn_131_Encoded", "JaspColumn_132_Encoded", "JaspColumn_133_Encoded", "JaspColumn_134_Encoded", "JaspColumn_135_Encoded", "JaspColumn_136_Encoded", "JaspColumn_35_Encoded", "JaspColumn_47_Encoded", "JaspColumn_48_Encoded", "JaspColumn_38_Encoded", "JaspColumn_39_Encoded", "JaspColumn_44_Encoded"), model = "
CIQ =~ JaspColumn_19_Encoded + JaspColumn_20_Encoded + JaspColumn_21_Encoded + JaspColumn_22_Encoded + JaspColumn_23_Encoded + JaspColumn_24_Encoded + JaspColumn_25_Encoded + JaspColumn_26_Encoded + JaspColumn_27_Encoded
Avoidant_Style =~ JaspColumn_35_Encoded + JaspColumn_38_Encoded + JaspColumn_39_Encoded + JaspColumn_44_Encoded + JaspColumn_47_Encoded + JaspColumn_48_Encoded
Credulity =~ JaspColumn_99_Encoded + JaspColumn_100_Encoded + JaspColumn_106_Encoded
JaspColumn_160_Encoded =~ JaspColumn_95_Encoded + JaspColumn_96_Encoded + JaspColumn_97_Encoded + JaspColumn_98_Encoded + JaspColumn_103_Encoded + JaspColumn_104_Encoded + JaspColumn_105_Encoded
PTSD_DSM =~ JaspColumn_128_Encoded + JaspColumn_129_Encoded + JaspColumn_130_Encoded + JaspColumn_131_Encoded + JaspColumn_132_Encoded + JaspColumn_133_Encoded + JaspColumn_134_Encoded + JaspColumn_135_Encoded + JaspColumn_136_Encoded + JaspColumn_137_Encoded + JaspColumn_138_Encoded + JaspColumn_139_Encoded + JaspColumn_140_Encoded + JaspColumn_141_Encoded + JaspColumn_142_Encoded + JaspColumn_143_Encoded + JaspColumn_144_Encoded

Avoidant_Style ~ CIQ
Credulity ~ Avoidant_Style
JaspColumn_160_Encoded ~ Avoidant_Style
PTSD_DSM ~ CIQ + Avoidant_Style + Credulity + JaspColumn_160_Encoded

Credulity ~~ JaspColumn_160_Encoded
", modelOriginal = "# latent variables
CIQ =~ CIQ_1 + CIQ_2 + CIQ_3 + CIQ_4 + CIQ_5 + CIQ_6 + CIQ_7 + CIQ_8 + CIQ_9
Avoidant_Style =~ RD12_1 + RD12_3 + RD12_4 + RD12_8 + RD12_10 + RD12_11
Credulity =~ ETS_7 + ETS_8 + ETS_14
Mistrust =~ ETS_3 + ETS_4 + ETS_5 + ETS_6 + ETS_11 + ETS_12 + ETS_13
PTSD_DSM =~ PTSD_1 + PTSD_2 + PTSD_3 + PTSD_4 + PTSD_5 + PTSD_6 + PTSD_7 + PTSD_8 + PTSD_9 + PTSD_10 + PTSD_11 + PTSD_12 + PTSD_13 + PTSD_14 + PTSD_15 + PTSD_16 + PTSD_17

regressions

Avoidant_Style ~ CIQ
Credulity ~ Avoidant_Style
Mistrust ~ Avoidant_Style
PTSD_DSM ~ CIQ + Avoidant_Style + Credulity + Mistrust

residual (co)variances

Credulity ~~ Mistrust
"))))

Log (if any)

pSem::SEM(
version = "0.19",
models = list(list(name = "Model 1", syntax = list(columns = list("JaspColumn_19_Encoded", "JaspColumn_20_Encoded", "JaspColumn_21_Encoded", "JaspColumn_22_Encoded", "JaspColumn_23_Encoded", "JaspColumn_24_Encoded", "JaspColumn_25_Encoded", "JaspColumn_26_Encoded", "JaspColumn_27_Encoded", "JaspColumn_103_Encoded", "JaspColumn_104_Encoded", "JaspColumn_105_Encoded", "JaspColumn_106_Encoded", "JaspColumn_95_Encoded", "JaspColumn_96_Encoded", "JaspColumn_97_Encoded", "JaspColumn_98_Encoded", "JaspColumn_99_Encoded", "JaspColumn_100_Encoded", "JaspColumn_160_Encoded", "JaspColumn_128_Encoded", "JaspColumn_137_Encoded", "JaspColumn_138_Encoded", "JaspColumn_139_Encoded", "JaspColumn_140_Encoded", "JaspColumn_141_Encoded", "JaspColumn_142_Encoded", "JaspColumn_143_Encoded", "JaspColumn_144_Encoded", "JaspColumn_129_Encoded", "JaspColumn_130_Encoded", "JaspColumn_131_Encoded", "JaspColumn_132_Encoded", "JaspColumn_133_Encoded", "JaspColumn_134_Encoded", "JaspColumn_135_Encoded", "JaspColumn_136_Encoded", "JaspColumn_35_Encoded", "JaspColumn_47_Encoded", "JaspColumn_48_Encoded", "JaspColumn_38_Encoded", "JaspColumn_39_Encoded", "JaspColumn_44_Encoded"), model = "
CIQ =~ JaspColumn_19_Encoded + JaspColumn_20_Encoded + JaspColumn_21_Encoded + JaspColumn_22_Encoded + JaspColumn_23_Encoded + JaspColumn_24_Encoded + JaspColumn_25_Encoded + JaspColumn_26_Encoded + JaspColumn_27_Encoded
Avoidant_Style =~ JaspColumn_35_Encoded + JaspColumn_38_Encoded + JaspColumn_39_Encoded + JaspColumn_44_Encoded + JaspColumn_47_Encoded + JaspColumn_48_Encoded
Credulity =~ JaspColumn_99_Encoded + JaspColumn_100_Encoded + JaspColumn_106_Encoded
JaspColumn_160_Encoded =~ JaspColumn_95_Encoded + JaspColumn_96_Encoded + JaspColumn_97_Encoded + JaspColumn_98_Encoded + JaspColumn_103_Encoded + JaspColumn_104_Encoded + JaspColumn_105_Encoded
PTSD_DSM =~ JaspColumn_128_Encoded + JaspColumn_129_Encoded + JaspColumn_130_Encoded + JaspColumn_131_Encoded + JaspColumn_132_Encoded + JaspColumn_133_Encoded + JaspColumn_134_Encoded + JaspColumn_135_Encoded + JaspColumn_136_Encoded + JaspColumn_137_Encoded + JaspColumn_138_Encoded + JaspColumn_139_Encoded + JaspColumn_140_Encoded + JaspColumn_141_Encoded + JaspColumn_142_Encoded + JaspColumn_143_Encoded + JaspColumn_144_Encoded

Avoidant_Style ~ CIQ
Credulity ~ Avoidant_Style
JaspColumn_160_Encoded ~ Avoidant_Style
PTSD_DSM ~ CIQ + Avoidant_Style + Credulity + JaspColumn_160_Encoded

Credulity ~~ JaspColumn_160_Encoded
", modelOriginal = "# latent variables
CIQ =~ CIQ_1 + CIQ_2 + CIQ_3 + CIQ_4 + CIQ_5 + CIQ_6 + CIQ_7 + CIQ_8 + CIQ_9
Avoidant_Style =~ RD12_1 + RD12_3 + RD12_4 + RD12_8 + RD12_10 + RD12_11
Credulity =~ ETS_7 + ETS_8 + ETS_14
Mistrust =~ ETS_3 + ETS_4 + ETS_5 + ETS_6 + ETS_11 + ETS_12 + ETS_13
PTSD_DSM =~ PTSD_1 + PTSD_2 + PTSD_3 + PTSD_4 + PTSD_5 + PTSD_6 + PTSD_7 + PTSD_8 + PTSD_9 + PTSD_10 + PTSD_11 + PTSD_12 + PTSD_13 + PTSD_14 + PTSD_15 + PTSD_16 + PTSD_17

regressions

Avoidant_Style ~ CIQ
Credulity ~ Avoidant_Style
Mistrust ~ Avoidant_Style
PTSD_DSM ~ CIQ + Avoidant_Style + Credulity + Mistrust

residual (co)variances

Credulity ~~ Mistrust
"))))

More Debug Information

No response

Final Checklist

• I have included a screenshot showcasing the issue, if possible.
• I have included a JASP file (zipped) or data file that causes the crash/bug, if applicable.
• I have accurately described the bug, and steps to reproduce it.

[github-actions]

@panosgl, thanks for taking the time to create this issue. If possible (and applicable), please upload to the issue website (#2905) a screenshot showcasing the problem, and/or a compressed (zipped) .jasp file or the data file that causes the issue. If you would prefer not to make your data publicly available, you can send your file(s) directly to us, issues@jasp-stats.org

[juliuspfadt]

@panosgl thanks for creating the issue. This is likely caused by an option or syntax error but JASP doesnt manage to show the proper error message (yet). If you share a zipped .jasp file I may be able to locate the error better, or you could wait until my fix is in a newer version of JASP.

[panosgl]

Is this helpful? Panayiotis Lianos, MSc, PhD Assistant Professor of School Psychology School of Social Sciences Department of Psychology University of Ioannina 45110 Greece tel: +30 2651005755 Στις Τρί 10 Σεπ 2024 στις 3:23 μ.μ., ο/η Julius Pfadt < ***@***.***> έγραψε:

…

@panosgl <https://github.com/panosgl> thanks for creating the issue. This is likely caused by an option or syntax error but JASP doesnt manage to show the proper error message (yet). If you share a zipped .jasp file I may be able to locate the error better, or you could wait until my fix is in a newer version of JASP. — Reply to this email directly, view it on GitHub <#2905 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/BLFSZGO7KRL7LRYFIKMUKFTZV3QC7AVCNFSM6AAAAABN6NF7DWVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGNBQGU3DAMZYGM> . You are receiving this because you were mentioned.Message ID: ***@***.***>

[tomtomme]

Please drag and drop the zipped file here on github.com. Attaching via mail does not work

[panosgl]

Aftermath COVID-19_2024_new.jasp.zip