diff --git a/DESCRIPTION b/DESCRIPTION index 973979e8..a2c8297b 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -10,7 +10,7 @@ Description: Explore the relation between variables using data-driven methods fo License: GPL (>= 2) Encoding: UTF-8 Depends: - kknn + kknn (>= 1.4.1) Imports: AUC, cluster, @@ -48,5 +48,4 @@ Suggests: Remotes: jasp-stats/jaspBase, jasp-stats/jaspGraphs, - vandenman/kknn, RensDofferhoff/ggdendro diff --git a/renv.lock b/renv.lock index 8be6ff56..11cd562f 100644 --- a/renv.lock +++ b/renv.lock @@ -13,529 +13,1848 @@ "Package": "ADGofTest", "Version": "0.3", "Source": "Repository", - "Requirements": [] + "Type": "Package", + "Title": "Anderson-Darling GoF test", + "Date": "2011-12-28", + "Author": "Carlos J. Gil Bellosta", + "Maintainer": "Carlos J. Gil Bellosta ", + "Description": "Anderson-Darling GoF test with p-value calculation based on Marsaglia's 2004 paper \"Evaluating the Anderson-Darling Distribution\"", + "License": "GPL", + "LazyLoad": "yes", + "Repository": "CRAN" }, "AUC": { "Package": "AUC", "Version": "0.3.2", "Source": "Repository", - "Requirements": [] + "Type": "Package", + "Title": "Threshold Independent Performance Measures for Probabilistic Classifiers", + "Date": "2022-04-04", + "Author": "Michel Ballings and Dirk Van den Poel", + "Maintainer": "Michel Ballings ", + "Description": "Various functions to compute the area under the curve of selected measures: The area under the sensitivity curve (AUSEC), the area under the specificity curve (AUSPC), the area under the accuracy curve (AUACC), and the area under the receiver operating characteristic curve (AUROC). Support for visualization and partial areas is included.", + "License": "GPL (>= 2)", + "ByteCompile": "true", + "RoxygenNote": "7.1.2", + "Encoding": "UTF-8", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "DALEX": { "Package": "DALEX", "Version": "2.4.3", "Source": "Repository", - "Requirements": [ + "Title": "moDel Agnostic Language for Exploration and eXplanation", + "Authors@R": "c(person(\"Przemyslaw\", \"Biecek\", email = \"przemyslaw.biecek@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-8423-1823\")), person(\"Szymon\", \"Maksymiuk\", role = \"aut\", comment = c(ORCID = \"0000-0002-3120-1601\")), person(\"Hubert\", \"Baniecki\", role = \"aut\", comment = c(ORCID = \"0000-0001-6661-5364\")))", + "Description": "Any unverified black box model is the path to failure. Opaqueness leads to distrust. Distrust leads to ignoration. Ignoration leads to rejection. DALEX package xrays any model and helps to explore and explain its behaviour. Machine Learning (ML) models are widely used and have various applications in classification or regression. Models created with boosting, bagging, stacking or similar techniques are often used due to their high performance. But such black-box models usually lack direct interpretability. DALEX package contains various methods that help to understand the link between input variables and model output. Implemented methods help to explore the model on the level of a single instance as well as a level of the whole dataset. All model explainers are model agnostic and can be compared across different models. DALEX package is the cornerstone for 'DrWhy.AI' universe of packages for visual model exploration. Find more details in (Biecek 2018) .", + "License": "GPL", + "Encoding": "UTF-8", + "LazyData": "true", + "RoxygenNote": "7.2.3", + "Depends": [ + "R (>= 3.5)" + ], + "Imports": [ "ggplot2", - "iBreakDown", - "ingredients", - "R" - ] + "iBreakDown (>= 1.3.1)", + "ingredients (>= 2.0)" + ], + "Suggests": [ + "gower", + "ranger", + "testthat", + "methods" + ], + "URL": "https://modeloriented.github.io/DALEX/, https://dalex.drwhy.ai", + "BugReports": "https://github.com/ModelOriented/DALEX/issues", + "NeedsCompilation": "no", + "Author": "Przemyslaw Biecek [aut, cre] (), Szymon Maksymiuk [aut] (), Hubert Baniecki [aut] ()", + "Maintainer": "Przemyslaw Biecek ", + "Repository": "CRAN" }, "DEoptimR": { "Package": "DEoptimR", "Version": "1.1-3-1", "Source": "Repository", - "Requirements": [ + "Date": "2024-11-23", + "Title": "Differential Evolution Optimization in Pure R", + "Authors@R": "c( person(c(\"Eduardo\", \"L. T.\"), \"Conceicao\", role = c(\"aut\", \"cre\"), email = \"mail@eduardoconceicao.org\"), person(\"Martin\", \"Maechler\", role = \"ctb\", email = \"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) )", + "URL": "svn://svn.r-forge.r-project.org/svnroot/robustbase/pkg/DEoptimR", + "Description": "Differential Evolution (DE) stochastic heuristic algorithms for global optimization of problems with and without general constraints. The aim is to curate a collection of its variants that (1) do not sacrifice simplicity of design, (2) are essentially tuning-free, and (3) can be efficiently implemented directly in the R language. Currently, it provides implementations of the algorithms 'jDE' by Brest et al. (2006) for single-objective optimization and 'NCDE' by Qu et al. (2012) for multimodal optimization (single-objective problems with multiple solutions).", + "Imports": [ "stats" - ] + ], + "Enhances": [ + "robustbase" + ], + "License": "GPL (>= 2)", + "Author": "Eduardo L. T. Conceicao [aut, cre], Martin Maechler [ctb] ()", + "Maintainer": "Eduardo L. T. Conceicao ", + "Repository": "CRAN", + "Repository/R-Forge/Project": "robustbase", + "Repository/R-Forge/Revision": "1008", + "Repository/R-Forge/DateTimeStamp": "2024-11-23 19:13:45", + "NeedsCompilation": "no" }, "Deriv": { "Package": "Deriv", "Version": "4.1.6", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Symbolic Differentiation", + "Date": "2024-09-12", + "Authors@R": "c(person(given=\"Andrew\", family=\"Clausen\", role=\"aut\"), person(given=\"Serguei\", family=\"Sokol\", role=c(\"aut\", \"cre\"), email=\"sokol@insa-toulouse.fr\", comment = c(ORCID = \"0000-0002-5674-3327\")), person(given=\"Andreas\", family=\"Rappold\", role=\"ctb\", email=\"arappold@gmx.at\"))", + "Description": "R-based solution for symbolic differentiation. It admits user-defined function as well as function substitution in arguments of functions to be differentiated. Some symbolic simplification is part of the work.", + "License": "GPL (>= 3)", + "Suggests": [ + "testthat (>= 0.11.0)" + ], + "BugReports": "https://github.com/sgsokol/Deriv/issues", + "RoxygenNote": "7.3.1", + "Imports": [ "methods" - ] + ], + "NeedsCompilation": "no", + "Author": "Andrew Clausen [aut], Serguei Sokol [aut, cre] (), Andreas Rappold [ctb]", + "Maintainer": "Serguei Sokol ", + "Repository": "CRAN" }, "Formula": { "Package": "Formula", "Version": "1.2-5", "Source": "Repository", - "Requirements": [ - "R", + "Date": "2023-02-23", + "Title": "Extended Model Formulas", + "Description": "Infrastructure for extended formulas with multiple parts on the right-hand side and/or multiple responses on the left-hand side (see ).", + "Authors@R": "c(person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")), person(given = \"Yves\", family = \"Croissant\", role = \"aut\", email = \"Yves.Croissant@univ-reunion.fr\"))", + "Depends": [ + "R (>= 2.0.0)", "stats" - ] + ], + "License": "GPL-2 | GPL-3", + "NeedsCompilation": "no", + "Author": "Achim Zeileis [aut, cre] (), Yves Croissant [aut]", + "Maintainer": "Achim Zeileis ", + "Repository": "CRAN" }, "Gmedian": { "Package": "Gmedian", "Version": "1.2.7", "Source": "Repository", - "Requirements": [ - "R", + "Type": "Package", + "Title": "Geometric Median, k-Medians Clustering and Robust Median PCA", + "Date": "2022-08-06", + "Author": "Herve Cardot", + "Maintainer": "Herve Cardot ", + "Description": "Fast algorithms for robust estimation with large samples of multivariate observations. Estimation of the geometric median, robust k-Gmedian clustering, and robust PCA based on the Gmedian covariation matrix.", + "License": "GPL (>= 2)", + "Depends": [ + "R (>= 3.0.0)" + ], + "Imports": [ + "Rcpp (>= 0.12.6)", + "RSpectra", + "robustbase" + ], + "LinkingTo": [ "Rcpp", "RcppArmadillo", - "robustbase", "RSpectra" - ] + ], + "NeedsCompilation": "yes", + "Repository": "CRAN" }, "KernSmooth": { "Package": "KernSmooth", "Version": "2.23-26", "Source": "Repository", - "Requirements": [ - "R", + "Priority": "recommended", + "Date": "2024-12-10", + "Title": "Functions for Kernel Smoothing Supporting Wand & Jones (1995)", + "Authors@R": "c(person(\"Matt\", \"Wand\", role = \"aut\", email = \"Matt.Wand@uts.edu.au\"), person(\"Cleve\", \"Moler\", role = \"ctb\", comment = \"LINPACK routines in src/d*\"), person(\"Brian\", \"Ripley\", role = c(\"trl\", \"cre\", \"ctb\"), email = \"Brian.Ripley@R-project.org\", comment = \"R port and updates\"))", + "Note": "Maintainers are not available to give advice on using a package they did not author.", + "Depends": [ + "R (>= 2.5.0)", "stats" - ] + ], + "Suggests": [ + "MASS", + "carData" + ], + "Description": "Functions for kernel smoothing (and density estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) \"Kernel Smoothing\".", + "License": "Unlimited", + "ByteCompile": "yes", + "NeedsCompilation": "yes", + "Author": "Matt Wand [aut], Cleve Moler [ctb] (LINPACK routines in src/d*), Brian Ripley [trl, cre, ctb] (R port and updates)", + "Maintainer": "Brian Ripley ", + "Repository": "CRAN" }, "MASS": { "Package": "MASS", "Version": "7.3-65", "Source": "Repository", - "Requirements": [ - "graphics", + "Priority": "recommended", + "Date": "2025-02-19", + "Revision": "$Rev: 3681 $", + "Depends": [ + "R (>= 4.4.0)", "grDevices", - "methods", - "R", + "graphics", "stats", "utils" - ] + ], + "Imports": [ + "methods" + ], + "Suggests": [ + "lattice", + "nlme", + "nnet", + "survival" + ], + "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Brian.Ripley@R-project.org\"), person(\"Bill\", \"Venables\", role = c(\"aut\", \"cph\")), person(c(\"Douglas\", \"M.\"), \"Bates\", role = \"ctb\"), person(\"Kurt\", \"Hornik\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"Albrecht\", \"Gebhardt\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"David\", \"Firth\", role = \"ctb\", comment = \"support functions for polr\"))", + "Description": "Functions and datasets to support Venables and Ripley, \"Modern Applied Statistics with S\" (4th edition, 2002).", + "Title": "Support Functions and Datasets for Venables and Ripley's MASS", + "LazyData": "yes", + "ByteCompile": "yes", + "License": "GPL-2 | GPL-3", + "URL": "http://www.stats.ox.ac.uk/pub/MASS4/", + "Contact": "", + "NeedsCompilation": "yes", + "Author": "Brian Ripley [aut, cre, cph], Bill Venables [aut, cph], Douglas M. Bates [ctb], Kurt Hornik [trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial port ca 1998), David Firth [ctb] (support functions for polr)", + "Maintainer": "Brian Ripley ", + "Repository": "CRAN" }, "Matrix": { "Package": "Matrix", "Version": "1.7-3", "Source": "Repository", - "Requirements": [ - "graphics", + "VersionNote": "do also bump src/version.h, inst/include/Matrix/version.h", + "Date": "2025-03-05", + "Priority": "recommended", + "Title": "Sparse and Dense Matrix Classes and Methods", + "Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries. Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.", + "License": "GPL (>= 2) | file LICENCE", + "URL": "https://Matrix.R-forge.R-project.org", + "BugReports": "https://R-forge.R-project.org/tracker/?atid=294&group_id=61", + "Contact": "Matrix-authors@R-project.org", + "Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"mmaechler+Matrix@gmail.com\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Timothy A.\", \"Davis\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7614-6899\", \"SuiteSparse libraries\", \"collaborators listed in dir(system.file(\\\"doc\\\", \\\"SuiteSparse\\\", package=\\\"Matrix\\\"), pattern=\\\"License\\\", full.names=TRUE, recursive=TRUE)\")), person(\"George\", \"Karypis\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2753-1437\", \"METIS library\", \"Copyright: Regents of the University of Minnesota\")), person(\"Jason\", \"Riedy\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4345-4200\", \"GNU Octave's condest() and onenormest()\", \"Copyright: Regents of the University of California\")), person(\"Jens\", \"Oehlschlägel\", role = \"ctb\", comment = \"initial nearPD()\"), person(\"R Core Team\", role = \"ctb\", comment = c(ROR = \"02zz1nj61\", \"base R's matrix implementation\")))", + "Depends": [ + "R (>= 4.4)", + "methods" + ], + "Imports": [ "grDevices", + "graphics", "grid", "lattice", - "methods", - "R", "stats", "utils" - ] + ], + "Suggests": [ + "MASS", + "datasets", + "sfsmisc", + "tools" + ], + "Enhances": [ + "SparseM", + "graph" + ], + "LazyData": "no", + "LazyDataNote": "not possible, since we use data/*.R and our S4 classes", + "BuildResaveData": "no", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Douglas Bates [aut] (), Martin Maechler [aut, cre] (), Mikael Jagan [aut] (), Timothy A. 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Compared to reference classes, R6 classes are simpler and lighter-weight, and they are not built on S4 classes so they do not require the methods package. These classes allow public and private members, and they support inheritance, even when the classes are defined in different packages.", + "License": "MIT + file LICENSE", + "URL": "https://r6.r-lib.org, https://github.com/r-lib/R6", + "BugReports": "https://github.com/r-lib/R6/issues", + "Depends": [ + "R (>= 3.6)" + ], + "Suggests": [ + "lobstr", + "testthat (>= 3.0.0)" + ], + "Config/Needs/website": "tidyverse/tidytemplate, ggplot2, microbenchmark, scales", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd]", + "Maintainer": "Winston Chang ", + "Repository": "CRAN" }, "RColorBrewer": { "Package": "RColorBrewer", "Version": "1.1-3", "Source": "Repository", - "Requirements": [ - "R" - ] + "Date": "2022-04-03", + "Title": "ColorBrewer Palettes", + "Authors@R": "c(person(given = \"Erich\", family = \"Neuwirth\", role = c(\"aut\", \"cre\"), email = \"erich.neuwirth@univie.ac.at\"))", + "Author": "Erich Neuwirth [aut, cre]", + "Maintainer": "Erich Neuwirth ", + "Depends": [ + "R (>= 2.0.0)" + ], + "Description": "Provides color schemes for maps (and other graphics) designed by Cynthia Brewer as described at http://colorbrewer2.org.", + "License": "Apache License 2.0", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "ROCR": { "Package": "ROCR", "Version": "1.0-11", "Source": "Repository", - "Requirements": [ - "gplots", + "Authors@R": "c(person(\"Tobias\",\"Sing\", email = \"tobias.sing@gmail.com\",role=\"aut\"), person(\"Oliver\",\"Sander\", email = \"osander@gmail.com\",role=\"aut\"), person(\"Niko\",\"Beerenwinkel\", role=\"aut\"), person(\"Thomas\",\"Lengauer\", role=\"aut\"), person(\"Thomas\",\"Unterthiner\", role=\"ctb\"), person(\"Felix G.M.\",\"Ernst\", email = \"felix.gm.ernst@outlook.com\",role=\"cre\", comment = c(ORCID = \"0000-0001-5064-0928\")))", + "Date": "2020-05-01", + "Title": "Visualizing the Performance of Scoring Classifiers", + "Description": "ROC graphs, sensitivity/specificity curves, lift charts, and precision/recall plots are popular examples of trade-off visualizations for specific pairs of performance measures. ROCR is a flexible tool for creating cutoff-parameterized 2D performance curves by freely combining two from over 25 performance measures (new performance measures can be added using a standard interface). Curves from different cross-validation or bootstrapping runs can be averaged by different methods, and standard deviations, standard errors or box plots can be used to visualize the variability across the runs. The parameterization can be visualized by printing cutoff values at the corresponding curve positions, or by coloring the curve according to cutoff. All components of a performance plot can be quickly adjusted using a flexible parameter dispatching mechanism. Despite its flexibility, ROCR is easy to use, with only three commands and reasonable default values for all optional parameters.", + "Encoding": "UTF-8", + "License": "GPL (>= 2)", + "NeedsCompilation": "no", + "Depends": [ + "R (>= 3.6)" + ], + "Imports": [ + "methods", "graphics", "grDevices", - "methods", - "R", + "gplots", "stats" - ] + ], + "Suggests": [ + "testthat", + "knitr", + "rmarkdown" + ], + "URL": "http://ipa-tys.github.io/ROCR/", + "BugReports": "https://github.com/ipa-tys/ROCR/issues", + "RoxygenNote": "7.1.0", + "VignetteBuilder": "knitr", + "Author": "Tobias Sing [aut], Oliver Sander [aut], Niko Beerenwinkel [aut], Thomas Lengauer [aut], Thomas Unterthiner [ctb], Felix G.M. Ernst [cre] ()", + "Maintainer": "Felix G.M. Ernst ", + "Repository": "CRAN" }, "RSpectra": { "Package": "RSpectra", "Version": "0.16-2", "Source": "Repository", - "Requirements": [ - "Matrix", - "R", + "Type": "Package", + "Title": "Solvers for Large-Scale Eigenvalue and SVD Problems", + "Date": "2024-07-18", + "Authors@R": "c( person(\"Yixuan\", \"Qiu\", , \"yixuan.qiu@cos.name\", c(\"aut\", \"cre\")), person(\"Jiali\", \"Mei\", , \"vermouthmjl@gmail.com\", \"aut\", comment = \"Function interface of matrix operation\"), person(\"Gael\", \"Guennebaud\", , \"gael.guennebaud@inria.fr\", \"ctb\", comment = \"Eigenvalue solvers from the 'Eigen' library\"), person(\"Jitse\", \"Niesen\", , \"jitse@maths.leeds.ac.uk\", \"ctb\", comment = \"Eigenvalue solvers from the 'Eigen' library\") )", + "Description": "R interface to the 'Spectra' library for large-scale eigenvalue and SVD problems. It is typically used to compute a few eigenvalues/vectors of an n by n matrix, e.g., the k largest eigenvalues, which is usually more efficient than eigen() if k << n. This package provides the 'eigs()' function that does the similar job as in 'Matlab', 'Octave', 'Python SciPy' and 'Julia'. It also provides the 'svds()' function to calculate the largest k singular values and corresponding singular vectors of a real matrix. The matrix to be computed on can be dense, sparse, or in the form of an operator defined by the user.", + "License": "MPL (>= 2)", + "URL": "https://github.com/yixuan/RSpectra", + "BugReports": "https://github.com/yixuan/RSpectra/issues", + "Depends": [ + "R (>= 3.0.2)" + ], + "Imports": [ + "Matrix (>= 1.1-0)", + "Rcpp (>= 0.11.5)" + ], + "Suggests": [ + "knitr", + "rmarkdown", + "prettydoc" + ], + "LinkingTo": [ "Rcpp", - "RcppEigen" - ] + "RcppEigen (>= 0.3.3.3.0)" + ], + "VignetteBuilder": "knitr, rmarkdown", + "RoxygenNote": "7.1.2", + "NeedsCompilation": "yes", + "Author": "Yixuan Qiu [aut, cre], Jiali Mei [aut] (Function interface of matrix operation), Gael Guennebaud [ctb] (Eigenvalue solvers from the 'Eigen' library), Jitse Niesen [ctb] (Eigenvalue solvers from the 'Eigen' library)", + "Maintainer": "Yixuan Qiu ", + "Repository": "CRAN" }, "Rcpp": { "Package": "Rcpp", "Version": "1.0.14", "Source": "Repository", - "Requirements": [ + "Title": "Seamless R and C++ Integration", + "Date": "2025-01-11", + "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"JJ\", \"Allaire\", role = \"aut\", comment = c(ORCID = \"0000-0003-0174-9868\")), person(\"Kevin\", \"Ushey\", role = \"aut\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Qiang\", \"Kou\", role = \"aut\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Nathan\", \"Russell\", role = \"aut\"), person(\"Iñaki\", \"Ucar\", role = \"aut\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"John\", \"Chambers\", role = \"aut\"))", + "Description": "The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at , the paper by Eddelbuettel and Francois (2011, ), the book by Eddelbuettel (2013, ) and the paper by Eddelbuettel and Balamuta (2018, ); see 'citation(\"Rcpp\")' for details.", + "Imports": [ "methods", "utils" - ] + ], + "Suggests": [ + "tinytest", + "inline", + "rbenchmark", + "pkgKitten (>= 0.1.2)" + ], + "URL": "https://www.rcpp.org, https://dirk.eddelbuettel.com/code/rcpp.html, https://github.com/RcppCore/Rcpp", + "License": "GPL (>= 2)", + "BugReports": "https://github.com/RcppCore/Rcpp/issues", + "MailingList": "rcpp-devel@lists.r-forge.r-project.org", + "RoxygenNote": "6.1.1", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Dirk Eddelbuettel [aut, cre] (), Romain Francois [aut] (), JJ Allaire [aut] (), Kevin Ushey [aut] (), Qiang Kou [aut] (), Nathan Russell [aut], Iñaki Ucar [aut] (), Doug Bates [aut] (), John Chambers [aut]", + "Maintainer": "Dirk Eddelbuettel ", + "Repository": "CRAN" }, "RcppArmadillo": { "Package": "RcppArmadillo", "Version": "14.4.3-1", "Source": "Repository", - "Requirements": [ - "methods", - "R", - "Rcpp", + "Type": "Package", + "Title": "'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library", + "Date": "2025-05-21", + "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Binxiang\", \"Ni\", role = \"aut\"), person(\"Conrad\", \"Sanderson\", role = \"aut\", comment = c(ORCID = \"0000-0002-0049-4501\")))", + "Description": "'Armadillo' is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the header files from the templated 'Armadillo' library. Thus users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.", + "License": "GPL (>= 2)", + "LazyLoad": "yes", + "Depends": [ + "R (>= 3.3.0)" + ], + "LinkingTo": [ + "Rcpp" + ], + "Imports": [ + "Rcpp (>= 1.0.12)", "stats", - "utils" - ] + "utils", + "methods" + ], + "Suggests": [ + "tinytest", + "Matrix (>= 1.3.0)", + "pkgKitten", + "reticulate", + "slam" + ], + "URL": "https://github.com/RcppCore/RcppArmadillo, https://dirk.eddelbuettel.com/code/rcpp.armadillo.html", + "BugReports": "https://github.com/RcppCore/RcppArmadillo/issues", + "RoxygenNote": "6.0.1", + "NeedsCompilation": "yes", + "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Romain Francois [aut] (ORCID: ), Doug Bates [aut] (ORCID: ), Binxiang Ni [aut], Conrad Sanderson [aut] (ORCID: )", + "Maintainer": "Dirk Eddelbuettel ", + "Repository": "CRAN" }, "RcppEigen": { "Package": "RcppEigen", "Version": "0.3.4.0.2", "Source": "Repository", - "Requirements": [ - "R", - "Rcpp", + "Type": "Package", + "Title": "'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library", + "Date": "2024-08-23", + "Authors@R": "c(person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Yixuan\", \"Qiu\", role = \"aut\", comment = c(ORCID = \"0000-0003-0109-6692\")), person(\"Authors of\", \"Eigen\", role = \"cph\", comment = \"Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS\"))", + "Copyright": "See the file COPYRIGHTS for various Eigen copyright details", + "Description": "R and 'Eigen' integration using 'Rcpp'. 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'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.", + "License": "GPL (>= 2) | file LICENSE", + "LazyLoad": "yes", + "Depends": [ + "R (>= 3.6.0)" + ], + "LinkingTo": [ + "Rcpp" + ], + "Imports": [ + "Rcpp (>= 0.11.0)", "stats", "utils" - ] + ], + "Suggests": [ + "Matrix", + "inline", + "tinytest", + "pkgKitten", + "microbenchmark" + ], + "URL": "https://github.com/RcppCore/RcppEigen, https://dirk.eddelbuettel.com/code/rcpp.eigen.html", + "BugReports": "https://github.com/RcppCore/RcppEigen/issues", + "NeedsCompilation": "yes", + "Author": "Doug Bates [aut] (), Dirk Eddelbuettel [aut, cre] (), Romain Francois [aut] (), Yixuan Qiu [aut] (), Authors of Eigen [cph] (Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS)", + "Maintainer": "Dirk Eddelbuettel ", + "Repository": "CRAN" }, "Rtsne": { "Package": "Rtsne", "Version": "0.17", "Source": "Repository", - "Requirements": [ - "Rcpp", + "Type": "Package", + "Title": "T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation", + "Authors@R": "c( person(\"Jesse\", \"Krijthe\", ,\"jkrijthe@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Laurens\", \"van der Maaten\", role = c(\"cph\"), comment = \"Author of original C++ code\") )", + "Description": "An R wrapper around the fast T-distributed Stochastic Neighbor Embedding implementation by Van der Maaten (see for more information on the original implementation).", + "License": "file LICENSE", + "URL": "https://github.com/jkrijthe/Rtsne", + "Encoding": "UTF-8", + "Imports": [ + "Rcpp (>= 0.11.0)", "stats" - ] + ], + "LinkingTo": [ + "Rcpp" + ], + "Suggests": [ + "irlba", + "testthat" + ], + "RoxygenNote": "7.2.3", + "NeedsCompilation": "yes", + "Author": "Jesse Krijthe [aut, cre], Laurens van der Maaten [cph] (Author of original C++ code)", + "Maintainer": "Jesse Krijthe ", + "License_is_FOSS": "yes", + "Repository": "CRAN" }, "VGAM": { "Package": "VGAM", "Version": "1.1-13", "Source": "Repository", - "Requirements": [ + "Date": "2025-02-11", + "Title": "Vector Generalized Linear and Additive Models", + "Authors@R": "c(person(\"Thomas\", \"Yee\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-9970-3907\"), email = \"t.yee@auckland.ac.nz\"), person(\"Cleve\", \"Moler\", role = \"ctb\", comment = \"LINPACK routines in src\"))", + "Author": "Thomas Yee [aut, cre] (), Cleve Moler [ctb] (LINPACK routines in src)", + "Maintainer": "Thomas Yee ", + "Depends": [ + "R (>= 4.1.0)", "methods", - "R", - "splines", "stats", - "stats4" - ] + "stats4", + "splines" + ], + "Suggests": [ + "VGAMextra", + "MASS", + "mgcv" + ], + "Enhances": [ + "VGAMdata" + ], + "Description": "An implementation of about 6 major classes of statistical regression models. 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Thereby the user can be prompted for credentials or a passphrase if needed when R calls out to git or ssh.", + "License": "MIT + file LICENSE", + "URL": "https://r-lib.r-universe.dev/askpass", + "BugReports": "https://github.com/r-lib/askpass/issues", + "Encoding": "UTF-8", + "Imports": [ + "sys (>= 2.1)" + ], + "RoxygenNote": "7.2.3", + "Suggests": [ + "testthat" + ], + "Language": "en-US", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] ()", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" }, "backports": { "Package": "backports", "Version": "1.5.0", "Source": "Repository", - "Requirements": [ - "R" - ] + "Type": "Package", + "Title": "Reimplementations of Functions Introduced Since R-3.0.0", + "Authors@R": "c( person(\"Michel\", \"Lang\", NULL, \"michellang@gmail.com\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Duncan\", \"Murdoch\", NULL, \"murdoch.duncan@gmail.com\", role = c(\"aut\")), person(\"R Core Team\", role = \"aut\"))", + "Maintainer": "Michel Lang ", + "Description": "Functions introduced or changed since R v3.0.0 are re-implemented in this package. 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It also contains a number of lower level 'CLI' elements: rules, boxes, trees, and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI colors and text styles as well.", + "License": "MIT + file LICENSE", + "URL": "https://cli.r-lib.org, https://github.com/r-lib/cli", + "BugReports": "https://github.com/r-lib/cli/issues", + "Depends": [ + "R (>= 3.4)" + ], + "Imports": [ "utils" - ] + ], + "Suggests": [ + "callr", + "covr", + "crayon", + "digest", + "glue (>= 1.6.0)", + "grDevices", + "htmltools", + "htmlwidgets", + "knitr", + "methods", + "processx", + "ps (>= 1.3.4.9000)", + "rlang (>= 1.0.2.9003)", + "rmarkdown", + "rprojroot", + "rstudioapi", + "testthat (>= 3.2.0)", + "tibble", + "whoami", + "withr" + ], + "Config/Needs/website": "r-lib/asciicast, bench, brio, cpp11, decor, desc, fansi, prettyunits, sessioninfo, tidyverse/tidytemplate, usethis, vctrs", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "yes", + "Author": "Gábor Csárdi [aut, cre], Hadley Wickham [ctb], Kirill Müller [ctb], Salim Brüggemann [ctb] (), Posit Software, PBC [cph, fnd]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" }, "cluster": { "Package": "cluster", "Version": "2.1.8.1", "Source": "Repository", - "Requirements": [ + "VersionNote": "Last CRAN: 2.1.8 on 2024-12-10; 2.1.7 on 2024-12-06; 2.1.6 on 2023-11-30; 2.1.5 on 2023-11-27", + "Date": "2025-03-11", + "Priority": "recommended", + "Title": "\"Finding Groups in Data\": Cluster Analysis Extended Rousseeuw et al.", + "Description": "Methods for Cluster analysis. Much extended the original from Peter Rousseeuw, Anja Struyf and Mia Hubert, based on Kaufman and Rousseeuw (1990) \"Finding Groups in Data\".", + "Maintainer": "Martin Maechler ", + "Authors@R": "c(person(\"Martin\",\"Maechler\", role = c(\"aut\",\"cre\"), email=\"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) ,person(\"Peter\", \"Rousseeuw\", role=\"aut\", email=\"peter.rousseeuw@kuleuven.be\", comment = c(\"Fortran original\", ORCID = \"0000-0002-3807-5353\")) ,person(\"Anja\", \"Struyf\", role=\"aut\", comment= \"S original\") ,person(\"Mia\", \"Hubert\", role=\"aut\", email= \"Mia.Hubert@uia.ua.ac.be\", comment = c(\"S original\", ORCID = \"0000-0001-6398-4850\")) ,person(\"Kurt\", \"Hornik\", role=c(\"trl\", \"ctb\"), email=\"Kurt.Hornik@R-project.org\", comment=c(\"port to R; maintenance(1999-2000)\", ORCID=\"0000-0003-4198-9911\")) ,person(\"Matthias\", \"Studer\", role=\"ctb\") ,person(\"Pierre\", \"Roudier\", role=\"ctb\") ,person(\"Juan\", \"Gonzalez\", role=\"ctb\") ,person(\"Kamil\", \"Kozlowski\", role=\"ctb\") ,person(\"Erich\", \"Schubert\", role=\"ctb\", comment = c(\"fastpam options for pam()\", ORCID = \"0000-0001-9143-4880\")) ,person(\"Keefe\", \"Murphy\", role=\"ctb\", comment = \"volume.ellipsoid({d >= 3})\") #not yet ,person(\"Fischer-Rasmussen\", \"Kasper\", role = \"ctb\", comment = \"Gower distance for CLARA\") )", + "Depends": [ + "R (>= 3.5.0)" + ], + "Imports": [ "graphics", "grDevices", - "R", "stats", "utils" - ] + ], + "Suggests": [ + "MASS", + "Matrix" + ], + "SuggestsNote": "MASS: two examples using cov.rob() and mvrnorm(); Matrix tools for testing", + "Enhances": [ + "mvoutlier", + "fpc", + "ellipse", + "sfsmisc" + ], + "EnhancesNote": "xref-ed in man/*.Rd", + "LazyLoad": "yes", + "LazyData": "yes", + "ByteCompile": "yes", + "BuildResaveData": "no", + "License": "GPL (>= 2)", + "URL": "https://svn.r-project.org/R-packages/trunk/cluster/", + "NeedsCompilation": "yes", + "Author": "Martin Maechler [aut, cre] (), Peter Rousseeuw [aut] (Fortran original, ), Anja Struyf [aut] (S original), Mia Hubert [aut] (S original, ), Kurt Hornik [trl, ctb] (port to R; maintenance(1999-2000), ), Matthias Studer [ctb], Pierre Roudier [ctb], Juan Gonzalez [ctb], Kamil Kozlowski [ctb], Erich Schubert [ctb] (fastpam options for pam(), ), Keefe Murphy [ctb] (volume.ellipsoid({d >= 3}))", + "Repository": "CRAN" }, "coda": { "Package": "coda", "Version": "0.19-4.1", "Source": "Repository", - "Requirements": [ - "lattice", - "R" - ] + "Date": "2020-09-30", + "Title": "Output Analysis and Diagnostics for MCMC", + "Authors@R": "c(person(\"Martyn\", \"Plummer\", role=c(\"aut\",\"cre\",\"trl\"), email=\"martyn.plummer@gmail.com\"), person(\"Nicky\", \"Best\", role=\"aut\"), person(\"Kate\", \"Cowles\", role=\"aut\"), person(\"Karen\", \"Vines\", role=\"aut\"), person(\"Deepayan\", \"Sarkar\", role=\"aut\"), person(\"Douglas\", \"Bates\", role=\"aut\"), person(\"Russell\", \"Almond\", role=\"aut\"), person(\"Arni\", \"Magnusson\", role=\"aut\"))", + "Depends": [ + "R (>= 2.14.0)" + ], + "Imports": [ + "lattice" + ], + "Description": "Provides functions for summarizing and plotting the output from Markov Chain Monte Carlo (MCMC) simulations, as well as diagnostic tests of convergence to the equilibrium distribution of the Markov chain.", + "License": "GPL (>= 2)", + "NeedsCompilation": "no", + "Author": "Martyn Plummer [aut, cre, trl], Nicky Best [aut], Kate Cowles [aut], Karen Vines [aut], Deepayan Sarkar [aut], Douglas Bates [aut], Russell Almond [aut], Arni Magnusson [aut]", + "Maintainer": "Martyn Plummer ", + "Repository": "CRAN" }, "codetools": { "Package": "codetools", "Version": "0.2-20", "Source": "Repository", - "Requirements": [ - "R" - ] + "Priority": "recommended", + "Author": "Luke Tierney ", + "Description": "Code analysis tools for R.", + "Title": "Code Analysis Tools for R", + "Depends": [ + "R (>= 2.1)" + ], + "Maintainer": "Luke Tierney ", + "URL": "https://gitlab.com/luke-tierney/codetools", + "License": "GPL", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "colorspace": { "Package": "colorspace", "Version": "2.1-1", "Source": "Repository", - "Requirements": [ + "Date": "2024-07-26", + "Title": "A Toolbox for Manipulating and Assessing Colors and Palettes", + "Authors@R": "c(person(given = \"Ross\", family = \"Ihaka\", role = \"aut\", email = \"ihaka@stat.auckland.ac.nz\"), person(given = \"Paul\", family = \"Murrell\", role = \"aut\", email = \"paul@stat.auckland.ac.nz\", comment = c(ORCID = \"0000-0002-3224-8858\")), person(given = \"Kurt\", family = \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(given = c(\"Jason\", \"C.\"), family = \"Fisher\", role = \"aut\", email = \"jfisher@usgs.gov\", comment = c(ORCID = \"0000-0001-9032-8912\")), person(given = \"Reto\", family = \"Stauffer\", role = \"aut\", email = \"Reto.Stauffer@uibk.ac.at\", comment = c(ORCID = \"0000-0002-3798-5507\")), person(given = c(\"Claus\", \"O.\"), family = \"Wilke\", role = \"aut\", email = \"wilke@austin.utexas.edu\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(given = c(\"Claire\", \"D.\"), family = \"McWhite\", role = \"aut\", email = \"claire.mcwhite@utmail.utexas.edu\", comment = c(ORCID = \"0000-0001-7346-3047\")), person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")))", + "Description": "Carries out mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB, and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided along with corresponding ggplot2 color scales. Color palette choice is aided by an interactive app (with either a Tcl/Tk or a shiny graphical user interface) and shiny apps with an HCL color picker and a color vision deficiency emulator. Plotting functions for displaying and assessing palettes include color swatches, visualizations of the HCL space, and trajectories in HCL and/or RGB spectrum. Color manipulation functions include: desaturation, lightening/darkening, mixing, and simulation of color vision deficiencies (deutanomaly, protanomaly, tritanomaly). Details can be found on the project web page at and in the accompanying scientific paper: Zeileis et al. (2020, Journal of Statistical Software, ).", + "Depends": [ + "R (>= 3.0.0)", + "methods" + ], + "Imports": [ "graphics", "grDevices", - "methods", - "R", "stats" - ] + ], + "Suggests": [ + "datasets", + "utils", + "KernSmooth", + "MASS", + "kernlab", + "mvtnorm", + "vcd", + "tcltk", + "shiny", + "shinyjs", + "ggplot2", + "dplyr", + "scales", + "grid", + "png", + "jpeg", + "knitr", + "rmarkdown", + "RColorBrewer", + "rcartocolor", + "scico", + "viridis", + "wesanderson" + ], + "VignetteBuilder": "knitr", + "License": "BSD_3_clause + file LICENSE", + "URL": "https://colorspace.R-Forge.R-project.org/, https://hclwizard.org/", + "BugReports": "https://colorspace.R-Forge.R-project.org/contact.html", + "LazyData": "yes", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1", + "NeedsCompilation": "yes", + "Author": "Ross Ihaka [aut], Paul Murrell [aut] (), Kurt Hornik [aut] (), Jason C. Fisher [aut] (), Reto Stauffer [aut] (), Claus O. Wilke [aut] (), Claire D. McWhite [aut] (), Achim Zeileis [aut, cre] ()", + "Maintainer": "Achim Zeileis ", + "Repository": "CRAN" }, "copula": { "Package": "copula", "Version": "1.1-6", "Source": "Repository", - "Requirements": [ - "ADGofTest", - "colorspace", + "VersionNote": "Last CRAN: 1.1-5 on 2025-02-09, 1.1-4 on 2024-08-12, 1.1-3 on 2023-12-07", + "Date": "2025-03-05", + "Title": "Multivariate Dependence with Copulas", + "Authors@R": "c(person(\"Marius\", \"Hofert\", role = \"aut\", email = \"marius.hofert@uwaterloo.ca\", comment = c(ORCID = \"0000-0001-8009-4665\")) , person(\"Ivan\", \"Kojadinovic\", role = \"aut\", email = \"ivan.kojadinovic@univ-pau.fr\", comment = c(ORCID = \"0000-0002-2903-1543\")) , person(\"Martin\",\"Maechler\", role=c(\"aut\",\"cre\"), email=\"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) , person(\"Jun\", \"Yan\", role = \"aut\", email = \"jun.yan@uconn.edu\", comment = c(ORCID = \"0000-0003-4401-7296\")) , person(c(\"Johanna\", \"G.\"), \"Nešlehová\", role = \"ctb\", comment = c(\"evTestK()\", ORCID = \"0000-0001-9634-4796\")) , person(\"Rebecca\", \"Morger\", role = \"ctb\", comment = \"fitCopula.ml(): code for free mixCopula weight parameters\") )", + "Depends": [ + "R (>= 3.5.0)" + ], + "Imports": [ + "stats", "graphics", - "gsl", - "lattice", - "Matrix", "methods", + "stats4", + "Matrix (>= 1.5-0)", + "lattice", + "colorspace", + "gsl", + "ADGofTest", + "stabledist (>= 0.6-4)", "mvtnorm", - "numDeriv", "pcaPP", "pspline", - "R", - "stabledist", - "stats", - "stats4" - ] + "numDeriv" + ], + "Suggests": [ + "MASS", + "KernSmooth", + "sfsmisc", + "scatterplot3d", + "Rmpfr", + "bbmle", + "knitr", + "rmarkdown", + "animation", + "abind", + "crop", + "gridExtra", + "HAC", + "lcopula", + "mev", + "mvnormtest", + "parallel", + "partitions", + "polynom", + "qrng", + "randtoolbox", + "rugarch", + "Runuran", + "tseries", + "VGAM", + "VineCopula", + "zoo" + ], + "SuggestsNote": "packages {animation, ..., zoo} (last lines above) are only used in vignettes, demos and a few tests.", + "VignetteBuilder": "knitr", + "Enhances": [ + "nor1mix", + "copulaData" + ], + "SystemRequirements": "pdfcrop (part of TexLive) is required to rebuild the vignettes.", + "Description": "Classes (S4) of commonly used elliptical, Archimedean, extreme-value and other copula families, as well as their rotations, mixtures and asymmetrizations. Nested Archimedean copulas, related tools and special functions. Methods for density, distribution, random number generation, bivariate dependence measures, Rosenblatt transform, Kendall distribution function, perspective and contour plots. Fitting of copula models with potentially partly fixed parameters, including standard errors. Serial independence tests, copula specification tests (independence, exchangeability, radial symmetry, extreme-value dependence, goodness-of-fit) and model selection based on cross-validation. Empirical copula, smoothed versions, and non-parametric estimators of the Pickands dependence function.", + "License": "GPL (>= 3) | file LICENCE", + "Collate": "AllClass.R Classes.R AllGeneric.R Auxiliaries.R aux-acopula.R asymCopula.R mixCopula.R rotCopula.R Copula.R special-func.R amhCopula.R claytonCopula.R frankCopula.R cop_objects.R nacopula.R dC-dc.R amhExpr.R An.R archmCopula.R cCopula.R claytonExpr.R ellipCopula.R empCopula.R empPsi.R acR.R estimation.R evCopula.R evTests.R exchTests.R fgmCopula.R fitCopula.R fitLambda.R fitMvdc.R fixedPar.R frankExpr.R galambosCopula.R galambosExpr-math.R galambosExpr.R ggraph-tools.R pairsRosenblatt.R prob.R gofTrafos.R gofEVTests.R gofCopula.R graphics.R gumbelCopula.R gumbelExpr.R huslerReissCopula.R huslerReissExpr.R indepCopula.R fhCopula.R lowfhCopula.R upfhCopula.R indepTests.R joeCopula.R K.R logseries.R mvdc.R margCopula.R matrix_tools.R normalCopula.R obs.R opower.R plackettCopula.R plackettExpr.R moCopula.R rstable1.R safeUroot.R schlatherCopula.R stable.R timing.R tCopula.R tawnCopula.R tawnExpr.R tevCopula.R varianceReduction.R wrapper.R xvCopula.R zzz.R", + "Encoding": "UTF-8", + "URL": "https://copula.r-forge.r-project.org/, https://r-forge.r-project.org/projects/copula/, https://CRAN.r-project.org/package=copula", + "BugReports": "https://r-forge.r-project.org/tracker/?func=add&group_id=2140&atid=5417", + "NeedsCompilation": "yes", + "Author": "Marius Hofert [aut] (), Ivan Kojadinovic [aut] (), Martin Maechler [aut, cre] (), Jun Yan [aut] (), Johanna G. Nešlehová [ctb] (evTestK(), ), Rebecca Morger [ctb] (fitCopula.ml(): code for free mixCopula weight parameters)", + "Maintainer": "Martin Maechler ", + "Repository": "CRAN" }, "cpp11": { "Package": "cpp11", "Version": "0.5.2", "Source": "Repository", - "Requirements": [ - "R" - ] + "Title": "A C++11 Interface for R's C Interface", + "Authors@R": "c( person(\"Davis\", \"Vaughan\", email = \"davis@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Jim\",\"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Romain\", \"François\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Benjamin\", \"Kietzman\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Provides a header only, C++11 interface to R's C interface. Compared to other approaches 'cpp11' strives to be safe against long jumps from the C API as well as C++ exceptions, conform to normal R function semantics and supports interaction with 'ALTREP' vectors.", + "License": "MIT + file LICENSE", + "URL": "https://cpp11.r-lib.org, https://github.com/r-lib/cpp11", + "BugReports": "https://github.com/r-lib/cpp11/issues", + "Depends": [ + "R (>= 4.0.0)" + ], + "Suggests": [ + "bench", + "brio", + "callr", + "cli", + "covr", + "decor", + "desc", + "ggplot2", + "glue", + "knitr", + "lobstr", + "mockery", + "progress", + "rmarkdown", + "scales", + "Rcpp", + "testthat (>= 3.2.0)", + "tibble", + "utils", + "vctrs", + "withr" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/Needs/cpp11/cpp_register": "brio, cli, decor, desc, glue, tibble, vctrs", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Davis Vaughan [aut, cre] (), Jim Hester [aut] (), Romain François [aut] (), Benjamin Kietzman [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Davis Vaughan ", + "Repository": "CRAN" + }, + "crayon": { + "Package": "crayon", + "Version": "1.5.3", + "Source": "Repository", + "Title": "Colored Terminal Output", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Brodie\", \"Gaslam\", , \"brodie.gaslam@yahoo.com\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "The crayon package is now superseded. Please use the 'cli' package for new projects. Colored terminal output on terminals that support 'ANSI' color and highlight codes. It also works in 'Emacs' 'ESS'. 'ANSI' color support is automatically detected. Colors and highlighting can be combined and nested. New styles can also be created easily. This package was inspired by the 'chalk' 'JavaScript' project.", + "License": "MIT + file LICENSE", + "URL": "https://r-lib.github.io/crayon/, https://github.com/r-lib/crayon", + "BugReports": "https://github.com/r-lib/crayon/issues", + "Imports": [ + "grDevices", + "methods", + "utils" + ], + "Suggests": [ + "mockery", + "rstudioapi", + "testthat", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1", + "Collate": "'aaa-rstudio-detect.R' 'aaaa-rematch2.R' 'aab-num-ansi-colors.R' 'aac-num-ansi-colors.R' 'ansi-256.R' 'ansi-palette.R' 'combine.R' 'string.R' 'utils.R' 'crayon-package.R' 'disposable.R' 'enc-utils.R' 'has_ansi.R' 'has_color.R' 'link.R' 'styles.R' 'machinery.R' 'parts.R' 'print.R' 'style-var.R' 'show.R' 'string_operations.R'", + "NeedsCompilation": "no", + "Author": "Gábor Csárdi [aut, cre], Brodie Gaslam [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" + }, + "curl": { + "Package": "curl", + "Version": "6.3.0", + "Source": "Repository", + "Type": "Package", + "Title": "A Modern and Flexible Web Client for R", + "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Posit Software, PBC\", role = \"cph\"))", + "Description": "Bindings to 'libcurl' for performing fully configurable HTTP/FTP requests where responses can be processed in memory, on disk, or streaming via the callback or connection interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the 'httr2' package which builds on this package with http specific tools and logic.", + "License": "MIT + file LICENSE", + "SystemRequirements": "libcurl (>= 7.62): libcurl-devel (rpm) or libcurl4-openssl-dev (deb)", + "URL": "https://jeroen.r-universe.dev/curl", + "BugReports": "https://github.com/jeroen/curl/issues", + "Suggests": [ + "spelling", + "testthat (>= 1.0.0)", + "knitr", + "jsonlite", + "later", + "rmarkdown", + "httpuv (>= 1.4.4)", + "webutils" + ], + "VignetteBuilder": "knitr", + "Depends": [ + "R (>= 3.0.0)" + ], + "RoxygenNote": "7.3.2.9000", + "Encoding": "UTF-8", + "Language": "en-US", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Hadley Wickham [ctb], Posit Software, PBC [cph]", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" + }, + "data.table": { + "Package": "data.table", + "Version": "1.17.4", + "Source": "Repository", + "Title": "Extension of `data.frame`", + "Depends": [ + "R (>= 3.3.0)" + ], + "Imports": [ + "methods" + ], + "Suggests": [ + "bit64 (>= 4.0.0)", + "bit (>= 4.0.4)", + "R.utils", + "xts", + "zoo (>= 1.8-1)", + "yaml", + "knitr", + "markdown" + ], + "Description": "Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. 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[aut] (ORCID: ), Toby Hocking [aut] (ORCID: ), Benjamin Schwendinger [aut] (ORCID: ), Ivan Krylov [aut] (ORCID: ), Pasha Stetsenko [ctb], Tom Short [ctb], Steve Lianoglou [ctb], Eduard Antonyan [ctb], Markus Bonsch [ctb], Hugh Parsonage [ctb], Scott Ritchie [ctb], Kun Ren [ctb], Xianying Tan [ctb], Rick Saporta [ctb], Otto Seiskari [ctb], Xianghui Dong [ctb], Michel Lang [ctb], Watal Iwasaki [ctb], Seth Wenchel [ctb], Karl Broman [ctb], Tobias Schmidt [ctb], David Arenburg [ctb], Ethan Smith [ctb], Francois Cocquemas [ctb], Matthieu Gomez [ctb], Philippe Chataignon [ctb], Nello Blaser [ctb], Dmitry Selivanov [ctb], Andrey Riabushenko [ctb], Cheng Lee [ctb], Declan Groves [ctb], Daniel Possenriede [ctb], Felipe Parages [ctb], Denes Toth [ctb], Mus Yaramaz-David [ctb], Ayappan Perumal [ctb], James Sams [ctb], Martin Morgan [ctb], Michael Quinn [ctb], @javrucebo [ctb], @marc-outins [ctb], Roy Storey [ctb], Manish Saraswat [ctb], Morgan Jacob [ctb], Michael Schubmehl [ctb], Davis Vaughan [ctb], Leonardo Silvestri [ctb], Jim Hester [ctb], Anthony Damico [ctb], Sebastian Freundt [ctb], David Simons [ctb], Elliott Sales de Andrade [ctb], Cole Miller [ctb], Jens Peder Meldgaard [ctb], Vaclav Tlapak [ctb], Kevin Ushey [ctb], Dirk Eddelbuettel [ctb], Tony Fischetti [ctb], Ofek Shilon [ctb], Vadim Khotilovich [ctb], Hadley Wickham [ctb], Bennet Becker [ctb], Kyle Haynes [ctb], Boniface Christian Kamgang [ctb], Olivier Delmarcell [ctb], Josh O'Brien [ctb], Dereck de Mezquita [ctb], Michael Czekanski [ctb], Dmitry Shemetov [ctb], Nitish Jha [ctb], Joshua Wu [ctb], Iago Giné-Vázquez [ctb], Anirban Chetia [ctb], Doris Amoakohene [ctb], Angel Feliz [ctb], Michael Young [ctb], Mark Seeto [ctb], Philippe Grosjean [ctb], Vincent Runge [ctb], Christian Wia [ctb], Elise Maigné [ctb], Vincent Rocher [ctb], Vijay Lulla [ctb], Aljaž Sluga [ctb], Bill Evans [ctb]", + "Maintainer": "Tyson Barrett ", + "Repository": "CRAN" }, "dbscan": { "Package": "dbscan", "Version": "1.2.2", "Source": "Repository", - "Requirements": [ + "Title": "Density-Based Spatial Clustering of Applications with Noise (DBSCAN) and Related Algorithms", + "Date": "2025-01-25", + "Authors@R": "c( person(\"Michael\", \"Hahsler\", email = \"mhahsler@lyle.smu.edu\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0003-2716-1405\")), person(\"Matthew\", \"Piekenbrock\", role = c(\"aut\", \"cph\")), person(\"Sunil\", \"Arya\", role = c(\"ctb\", \"cph\")), person(\"David\", \"Mount\", role = c(\"ctb\", \"cph\")), person(\"Claudia\", \"Malzer\", role = \"ctb\") )", + "Description": "A fast reimplementation of several density-based algorithms of the DBSCAN family. Includes the clustering algorithms DBSCAN (density-based spatial clustering of applications with noise) and HDBSCAN (hierarchical DBSCAN), the ordering algorithm OPTICS (ordering points to identify the clustering structure), shared nearest neighbor clustering, and the outlier detection algorithms LOF (local outlier factor) and GLOSH (global-local outlier score from hierarchies). The implementations use the kd-tree data structure (from library ANN) for faster k-nearest neighbor search. An R interface to fast kNN and fixed-radius NN search is also provided. Hahsler, Piekenbrock and Doran (2019) .", + "License": "GPL (>= 2)", + "URL": "https://github.com/mhahsler/dbscan", + "BugReports": "https://github.com/mhahsler/dbscan/issues", + "Depends": [ + "R (>= 3.2.0)" + ], + "Imports": [ "generics", "graphics", - "R", - "Rcpp", + "Rcpp (>= 1.0.0)", "stats" - ] + ], + "Suggests": [ + "dendextend", + "fpc", + "igraph", + "knitr", + "microbenchmark", + "rmarkdown", + "testthat (>= 3.0.0)", + "tibble" + ], + "LinkingTo": [ + "Rcpp" + ], + "VignetteBuilder": "knitr", + "Config/testthat/edition": "3", + "Copyright": "ANN library is copyright by University of Maryland, Sunil Arya and David Mount. All other code is copyright by Michael Hahsler and Matthew Piekenbrock.", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "yes", + "Author": "Michael Hahsler [aut, cre, cph] (), Matthew Piekenbrock [aut, cph], Sunil Arya [ctb, cph], David Mount [ctb, cph], Claudia Malzer [ctb]", + "Maintainer": "Michael Hahsler ", + "Repository": "CRAN" }, "desc": { "Package": "desc", "Version": "1.4.3", "Source": "Repository", - "Requirements": [ + "Title": "Manipulate DESCRIPTION Files", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kirill\", \"Müller\", role = \"aut\"), person(\"Jim\", \"Hester\", , \"james.f.hester@gmail.com\", role = \"aut\"), person(\"Maëlle\", \"Salmon\", role = \"ctb\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Maintainer": "Gábor Csárdi ", + "Description": "Tools to read, write, create, and manipulate DESCRIPTION files. It is intended for packages that create or manipulate other packages.", + "License": "MIT + file LICENSE", + "URL": "https://desc.r-lib.org/, https://github.com/r-lib/desc", + "BugReports": "https://github.com/r-lib/desc/issues", + "Depends": [ + "R (>= 3.4)" + ], + "Imports": [ "cli", - "R", "R6", "utils" - ] + ], + "Suggests": [ + "callr", + "covr", + "gh", + "spelling", + "testthat", + "whoami", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "Language": "en-US", + "RoxygenNote": "7.2.3", + "Collate": "'assertions.R' 'authors-at-r.R' 'built.R' 'classes.R' 'collate.R' 'constants.R' 'deps.R' 'desc-package.R' 'description.R' 'encoding.R' 'find-package-root.R' 'latex.R' 'non-oo-api.R' 'package-archives.R' 'read.R' 'remotes.R' 'str.R' 'syntax_checks.R' 'urls.R' 'utils.R' 'validate.R' 'version.R'", + "NeedsCompilation": "no", + "Author": "Gábor Csárdi [aut, cre], Kirill Müller [aut], Jim Hester [aut], Maëlle Salmon [ctb] (), Posit Software, PBC [cph, fnd]", + "Repository": "CRAN" + }, + "diffobj": { + "Package": "diffobj", + "Version": "0.3.6", + "Source": "Repository", + "Type": "Package", + "Title": "Diffs for R Objects", + "Description": "Generate a colorized diff of two R objects for an intuitive visualization of their differences.", + "Authors@R": "c( person( \"Brodie\", \"Gaslam\", email=\"brodie.gaslam@yahoo.com\", role=c(\"aut\", \"cre\")), person( \"Michael B.\", \"Allen\", email=\"ioplex@gmail.com\", role=c(\"ctb\", \"cph\"), comment=\"Original C implementation of Myers Diff Algorithm\"))", + "Depends": [ + "R (>= 3.1.0)" + ], + "License": "GPL-2 | GPL-3", + "URL": "https://github.com/brodieG/diffobj", + "BugReports": "https://github.com/brodieG/diffobj/issues", + "RoxygenNote": "7.2.3", + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "Suggests": [ + "knitr", + "rmarkdown" + ], + "Collate": "'capt.R' 'options.R' 'pager.R' 'check.R' 'finalizer.R' 'misc.R' 'html.R' 'styles.R' 's4.R' 'core.R' 'diff.R' 'get.R' 'guides.R' 'hunks.R' 'layout.R' 'myerssimple.R' 'rdiff.R' 'rds.R' 'set.R' 'subset.R' 'summmary.R' 'system.R' 'text.R' 'tochar.R' 'trim.R' 'word.R'", + "Imports": [ + "crayon (>= 1.3.2)", + "tools", + "methods", + "utils", + "stats" + ], + "NeedsCompilation": "yes", + "Author": "Brodie Gaslam [aut, cre], Michael B. Allen [ctb, cph] (Original C implementation of Myers Diff Algorithm)", + "Maintainer": "Brodie Gaslam ", + "Repository": "CRAN" }, "digest": { "Package": "digest", "Version": "0.6.37", "Source": "Repository", - "Requirements": [ - "R", + "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Antoine\", \"Lucas\", role=\"ctb\"), person(\"Jarek\", \"Tuszynski\", role=\"ctb\"), person(\"Henrik\", \"Bengtsson\", role=\"ctb\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Simon\", \"Urbanek\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2297-1732\")), person(\"Mario\", \"Frasca\", role=\"ctb\"), person(\"Bryan\", \"Lewis\", role=\"ctb\"), person(\"Murray\", \"Stokely\", role=\"ctb\"), person(\"Hannes\", \"Muehleisen\", role=\"ctb\"), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Jim\", \"Hester\", role=\"ctb\"), person(\"Wush\", \"Wu\", role=\"ctb\", comment = c(ORCID = \"0000-0001-5180-0567\")), person(\"Qiang\", \"Kou\", role=\"ctb\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Thierry\", \"Onkelinx\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")), person(\"Michel\", \"Lang\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Viliam\", \"Simko\", role=\"ctb\"), person(\"Kurt\", \"Hornik\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Radford\", \"Neal\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2473-3407\")), person(\"Kendon\", \"Bell\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9093-8312\")), person(\"Matthew\", \"de Queljoe\", role=\"ctb\"), person(\"Dmitry\", \"Selivanov\", role=\"ctb\"), person(\"Ion\", \"Suruceanu\", role=\"ctb\"), person(\"Bill\", \"Denney\", role=\"ctb\"), person(\"Dirk\", \"Schumacher\", role=\"ctb\"), person(\"András\", \"Svraka\", role=\"ctb\"), person(\"Sergey\", \"Fedorov\", role=\"ctb\"), person(\"Will\", \"Landau\", role=\"ctb\", comment = c(ORCID = \"0000-0003-1878-3253\")), person(\"Floris\", \"Vanderhaeghe\", role=\"ctb\", comment = c(ORCID = \"0000-0002-6378-6229\")), person(\"Kevin\", \"Tappe\", role=\"ctb\"), person(\"Harris\", \"McGehee\", role=\"ctb\"), person(\"Tim\", \"Mastny\", role=\"ctb\"), person(\"Aaron\", \"Peikert\", role=\"ctb\", comment = c(ORCID = \"0000-0001-7813-818X\")), person(\"Mark\", \"van der Loo\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9807-4686\")), person(\"Chris\", \"Muir\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2555-3878\")), person(\"Moritz\", \"Beller\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4852-0526\")), person(\"Sebastian\", \"Campbell\", role=\"ctb\"), person(\"Winston\", \"Chang\", role=\"ctb\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Dean\", \"Attali\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5645-3493\")), person(\"Michael\", \"Chirico\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Kevin\", \"Ushey\", role=\"ctb\"))", + "Date": "2024-08-19", + "Title": "Create Compact Hash Digests of R Objects", + "Description": "Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.", + "URL": "https://github.com/eddelbuettel/digest, https://dirk.eddelbuettel.com/code/digest.html", + "BugReports": "https://github.com/eddelbuettel/digest/issues", + "Depends": [ + "R (>= 3.3.0)" + ], + "Imports": [ "utils" - ] + ], + "License": "GPL (>= 2)", + "Suggests": [ + "tinytest", + "simplermarkdown" + ], + "VignetteBuilder": "simplermarkdown", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Dirk Eddelbuettel [aut, cre] (), Antoine Lucas [ctb], Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] (), Simon Urbanek [ctb] (), Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb], Duncan Murdoch [ctb], Jim Hester [ctb], Wush Wu [ctb] (), Qiang Kou [ctb] (), Thierry Onkelinx [ctb] (), Michel Lang [ctb] (), Viliam Simko [ctb], Kurt Hornik [ctb] (), Radford Neal [ctb] (), Kendon Bell [ctb] (), Matthew de Queljoe [ctb], Dmitry Selivanov [ctb], Ion Suruceanu [ctb], Bill Denney [ctb], Dirk Schumacher [ctb], András Svraka [ctb], Sergey Fedorov [ctb], Will Landau [ctb] (), Floris Vanderhaeghe [ctb] (), Kevin Tappe [ctb], Harris McGehee [ctb], Tim Mastny [ctb], Aaron Peikert [ctb] (), Mark van der Loo [ctb] (), Chris Muir [ctb] (), Moritz Beller [ctb] (), Sebastian Campbell [ctb], Winston Chang [ctb] (), Dean Attali [ctb] (), Michael Chirico [ctb] (), Kevin Ushey [ctb]", + "Maintainer": "Dirk Eddelbuettel ", + "Repository": "CRAN" }, "diptest": { "Package": "diptest", "Version": "0.77-1", "Source": "Repository", - 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As different colour spaces have different uses, efficient conversion between these representations are important. The 'farver' package provides a set of functions that gives access to very fast colour space conversion and comparisons implemented in C++, and offers speed improvements over the 'convertColor' function in the 'grDevices' package.", + "License": "MIT + file LICENSE", + "URL": "https://farver.data-imaginist.com, https://github.com/thomasp85/farver", + "BugReports": "https://github.com/thomasp85/farver/issues", + "Suggests": [ + "covr", + "testthat (>= 3.0.0)" + ], + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1", + "NeedsCompilation": "yes", + "Author": "Thomas Lin Pedersen [cre, aut] (), Berendea Nicolae [aut] (Author of the ColorSpace C++ library), Romain François [aut] (), Posit, PBC [cph, fnd]", + "Maintainer": "Thomas Lin Pedersen ", + "Repository": "CRAN" }, "fastmap": { "Package": "fastmap", "Version": "1.2.0", "Source": "Repository", - "Requirements": [] + "Title": "Fast Data Structures", + "Authors@R": "c( person(\"Winston\", \"Chang\", email = \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(given = \"Tessil\", role = \"cph\", comment = \"hopscotch_map library\") )", + "Description": "Fast implementation of data structures, including a key-value store, stack, and queue. Environments are commonly used as key-value stores in R, but every time a new key is used, it is added to R's global symbol table, causing a small amount of memory leakage. This can be problematic in cases where many different keys are used. Fastmap avoids this memory leak issue by implementing the map using data structures in C++.", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.3", + "Suggests": [ + "testthat (>= 2.1.1)" + ], + "URL": "https://r-lib.github.io/fastmap/, https://github.com/r-lib/fastmap", + "BugReports": "https://github.com/r-lib/fastmap/issues", + "NeedsCompilation": "yes", + "Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd], Tessil [cph] (hopscotch_map library)", + "Maintainer": "Winston Chang ", + "Repository": "CRAN" }, "flexmix": { "Package": "flexmix", "Version": "2.3-20", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Flexible Mixture Modeling", + "Authors@R": "c(person(\"Bettina\", \"Gruen\", role = c(\"aut\", \"cre\"), email = \"Bettina.Gruen@R-project.org\", comment = c(ORCID = \"0000-0001-7265-4773\")), person(\"Friedrich\", \"Leisch\", role = \"aut\", comment = c(ORCID = \"0000-0001-7278-1983\")), person(\"Deepayan\", \"Sarkar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4107-1553\")), person(\"Frederic\", \"Mortier\", role = \"ctb\"), person(\"Nicolas\", \"Picard\", role = \"ctb\", comment = c(ORCID = \"0000-0001-5548-9171\")))", + "Description": "A general framework for finite mixtures of regression models using the EM algorithm is implemented. The E-step and all data handling are provided, while the M-step can be supplied by the user to easily define new models. Existing drivers implement mixtures of standard linear models, generalized linear models and model-based clustering.", + "Depends": [ + "R (>= 2.15.0)", + "lattice" + ], + "Imports": [ "graphics", - "grDevices", "grid", - "lattice", + "grDevices", "methods", - "modeltools", + "modeltools (>= 0.2-16)", "nnet", - "R", "stats", "stats4", "utils" - ] + ], + "Suggests": [ + "actuar", + "codetools", + "diptest", + "Ecdat", + "ellipse", + "gclus", + "glmnet", + "lme4 (>= 1.1)", + "MASS", + "mgcv (>= 1.8-0)", + "mlbench", + "multcomp", + "mvtnorm", + "SuppDists", + "survival" + ], + "License": "GPL (>= 2)", + "LazyLoad": "yes", + "NeedsCompilation": "no", + "Author": "Bettina Gruen [aut, cre] (), Friedrich Leisch [aut] (), Deepayan Sarkar [ctb] (), Frederic Mortier [ctb], Nicolas Picard [ctb] ()", + "Maintainer": "Bettina Gruen ", + "Repository": "CRAN" }, "fontBitstreamVera": { "Package": "fontBitstreamVera", "Version": "0.1.1", "Source": "Repository", - "Requirements": [ - "R" - ] + "Title": "Fonts with 'Bitstream Vera Fonts' License", + "Authors@R": "c( person(\"Lionel\", \"Henry\", , \"lionel.hry@gmail.com\", c(\"cre\", \"aut\")), person(\"Bitstream\", role = \"cph\"))", + "Description": "Provides fonts licensed under the 'Bitstream Vera Fonts' license for the 'fontquiver' package.", + "Depends": [ + "R (>= 3.0.0)" + ], + "License": "file LICENCE", + "Encoding": "UTF-8", + "LazyData": "true", + "RoxygenNote": "5.0.1", + "NeedsCompilation": "no", + "Author": "Lionel Henry [cre, aut], Bitstream [cph]", + "Maintainer": "Lionel Henry ", + "License_is_FOSS": "yes", + "Repository": "CRAN" }, "fontLiberation": { "Package": "fontLiberation", "Version": "0.1.0", "Source": "Repository", - "Requirements": [ - "R" - ] + "Title": "Liberation Fonts", + "Authors@R": "c( person(\"Lionel\", \"Henry\", , \"lionel@rstudio.com\", \"cre\"), person(\"Pravin Satpute\", role = \"aut\"), person(\"Steve Matteson\", role = \"aut\"), person(\"Red Hat, Inc\", role = \"cph\"), person(\"Google Corporation\", role = \"cph\"))", + "Description": "A placeholder for the Liberation fontset intended for the `fontquiver` package. This fontset covers the 12 combinations of families (sans, serif, mono) and faces (plain, bold, italic, bold italic) supported in R graphics devices.", + "Depends": [ + "R (>= 3.0)" + ], + "License": "file LICENSE", + "Encoding": "UTF-8", + "LazyData": "true", + "RoxygenNote": "5.0.1", + "NeedsCompilation": "no", + "Author": "Lionel Henry [cre], Pravin Satpute [aut], Steve Matteson [aut], Red Hat, Inc [cph], Google Corporation [cph]", + "Maintainer": "Lionel Henry ", + "Repository": "CRAN", + "License_is_FOSS": "yes" }, "fontquiver": { "Package": "fontquiver", "Version": "0.2.1", "Source": "Repository", - "Requirements": [ - "fontBitstreamVera", - "fontLiberation", - "R" - ] + "Title": "Set of Installed Fonts", + "Authors@R": "c( person(\"Lionel\", \"Henry\", , \"lionel@rstudio.com\", c(\"cre\", \"aut\")), person(\"RStudio\", role = \"cph\"), person(\"George Douros\", role = \"cph\", comment = \"Symbola font\"))", + "Description": "Provides a set of fonts with permissive licences. 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Foreach is an idiom that allows for iterating over elements in a collection, without the use of an explicit loop counter. This package in particular is intended to be used for its return value, rather than for its side effects. In that sense, it is similar to the standard lapply function, but doesn't require the evaluation of a function. Using foreach without side effects also facilitates executing the loop in parallel.", + "License": "Apache License (== 2.0)", + "URL": "https://github.com/RevolutionAnalytics/foreach", + "BugReports": "https://github.com/RevolutionAnalytics/foreach/issues", + "Depends": [ + "R (>= 2.5.0)" + ], + "Imports": [ "codetools", - "iterators", - "R", - "utils" - ] + "utils", + "iterators" + ], + "Suggests": [ + "randomForest", + "doMC", + "doParallel", + "testthat", + "knitr", + "rmarkdown" + ], + "VignetteBuilder": "knitr", + "RoxygenNote": "7.1.1", + "Collate": "'callCombine.R' 'foreach.R' 'do.R' 'foreach-ext.R' 'foreach-pkg.R' 'getDoPar.R' 'getDoSeq.R' 'getsyms.R' 'iter.R' 'nextElem.R' 'onLoad.R' 'setDoPar.R' 'setDoSeq.R' 'times.R' 'utils.R'", + "NeedsCompilation": "no", + "Author": "Folashade Daniel [cre], Hong Ooi [ctb], Rich Calaway [ctb], Microsoft [aut, cph], Steve Weston [aut]", + "Maintainer": "Folashade Daniel ", + "Repository": "CRAN" }, "fpc": { "Package": "fpc", "Version": "2.2-13", "Source": "Repository", - "Requirements": [ - "class", - "cluster", - "diptest", - "flexmix", - "graphics", - "grDevices", - "kernlab", + "Title": "Flexible Procedures for Clustering", + "Date": "2024-09-23", + "Authors@R": "person(given = \"Christian\", family = \"Hennig\", role = c(\"aut\", \"cre\"), email = \"christian.hennig@unibo.it\")", + "Depends": [ + "R (>= 2.0)" + ], + "Imports": [ "MASS", + "cluster", "mclust", - "methods", - "parallel", + "flexmix", "prabclus", - "R", + "class", + "diptest", "robustbase", + "kernlab", + "grDevices", + "graphics", + "methods", "stats", - "utils" - ] + "utils", + "parallel" + ], + "Suggests": [ + "tclust", + "pdfCluster", + "mvtnorm" + ], + "Description": "Various methods for clustering and cluster validation. Fixed point clustering. Linear regression clustering. Clustering by merging Gaussian mixture components. Symmetric and asymmetric discriminant projections for visualisation of the separation of groupings. Cluster validation statistics for distance based clustering including corrected Rand index. Standardisation of cluster validation statistics by random clusterings and comparison between many clustering methods and numbers of clusters based on this. Cluster-wise cluster stability assessment. Methods for estimation of the number of clusters: Calinski-Harabasz, Tibshirani and Walther's prediction strength, Fang and Wang's bootstrap stability. Gaussian/multinomial mixture fitting for mixed continuous/categorical variables. Variable-wise statistics for cluster interpretation. DBSCAN clustering. Interface functions for many clustering methods implemented in R, including estimating the number of clusters with kmeans, pam and clara. Modality diagnosis for Gaussian mixtures. For an overview see package?fpc.", + "License": "GPL", + "URL": "https://www.unibo.it/sitoweb/christian.hennig/en/", + "NeedsCompilation": "no", + "Author": "Christian Hennig [aut, cre]", + "Maintainer": "Christian Hennig ", + "Repository": "CRAN" + }, + "fs": { + "Package": "fs", + "Version": "1.6.6", + "Source": "Repository", + "Title": "Cross-Platform File System Operations Based on 'libuv'", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "A cross-platform interface to file system operations, built on top of the 'libuv' C library.", + "License": "MIT + file LICENSE", + "URL": "https://fs.r-lib.org, https://github.com/r-lib/fs", + "BugReports": "https://github.com/r-lib/fs/issues", + "Depends": [ + "R (>= 3.6)" + ], + "Imports": [ + "methods" + ], + "Suggests": [ + "covr", + "crayon", + "knitr", + "pillar (>= 1.0.0)", + "rmarkdown", + "spelling", + "testthat (>= 3.0.0)", + "tibble (>= 1.1.0)", + "vctrs (>= 0.3.0)", + "withr" + ], + "VignetteBuilder": "knitr", + "ByteCompile": "true", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Copyright": "file COPYRIGHTS", + "Encoding": "UTF-8", + "Language": "en-US", + "RoxygenNote": "7.2.3", + "SystemRequirements": "GNU make", + "NeedsCompilation": "yes", + "Author": "Jim Hester [aut], Hadley Wickham [aut], Gábor Csárdi [aut, cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" }, "gbm": { "Package": "gbm", "Version": "2.2.2", "Source": "Repository", - "Requirements": [ + "Title": "Generalized Boosted Regression Models", + "Authors@R": "c( person(\"Greg\", \"Ridgeway\", email = \"gridge@upenn.edu\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-6911-0804\")), person(\"Daniel\", \"Edwards\", email = \"unknown@unknown.com\", role = \"ctb\"), person(\"Brian\", \"Kriegler\", email = \"bkriegler@econone.com\", role = \"ctb\"), person(\"Stefan\", \"Schroedl\", email = \"stefan@atomwise.com\", role = \"ctb\"), person(\"Harry\", \"Southworth\", email = \"harry@dataclarityconsulting.co.uk\", role = \"ctb\"), person(\"Brandon\", \"Greenwell\", email = \"greenwell.brandon@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8120-0084\")), person(\"Bradley\", \"Boehmke\", email = \"bradleyboehmke@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3611-8516\")), person(\"Jay\", \"Cunningham\", email = \"james@notbadafterall.com\", role = \"ctb\"), person(\"GBM\", \"Developers\", role = \"aut\", comment = \"https://github.com/gbm-developers\") )", + "Depends": [ + "R (>= 2.9.0)" + ], + "Imports": [ "lattice", "parallel", - "R", "survival" - ] + ], + "Suggests": [ + "covr", + "gridExtra", + "knitr", + "pdp", + "RUnit", + "splines", + "tinytest", + "vip", + "viridis" + ], + "Description": "An implementation of extensions to Freund and Schapire's AdaBoost algorithm and Friedman's gradient boosting machine. Includes regression methods for least squares, absolute loss, t-distribution loss, quantile regression, logistic, multinomial logistic, Poisson, Cox proportional hazards partial likelihood, AdaBoost exponential loss, Huberized hinge loss, and Learning to Rank measures (LambdaMart). Originally developed by Greg Ridgeway. 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Another set of functions is provided to support the collection of fonts from 'Google Fonts' in a cache. 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There are two new and important additions. The family argument can be a GLM family object, which opens the door to any programmed family (). This comes with a modest computational cost, so when the built-in families suffice, they should be used instead. The other novelty is the relax option, which refits each of the active sets in the path unpenalized. 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Warnes [aut], Ben Bolker [aut], Lodewijk Bonebakker [aut], Robert Gentleman [aut], Wolfgang Huber [aut], Andy Liaw [aut], Thomas Lumley [aut], Martin Maechler [aut], Arni Magnusson [aut], Steffen Moeller [aut], Marc Schwartz [aut], Bill Venables [aut], Tal Galili [aut, cre]", + "Maintainer": "Tal Galili ", + "Repository": "CRAN" }, "gridExtra": { "Package": "gridExtra", "Version": "2.3", "Source": "Repository", - "Requirements": [ - "graphics", - "grDevices", - "grid", + "Authors@R": "c(person(\"Baptiste\", \"Auguie\", email = \"baptiste.auguie@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Anton\", \"Antonov\", email = \"tonytonov@gmail.com\", role = c(\"ctb\")))", + "License": "GPL (>= 2)", + "Title": "Miscellaneous Functions for \"Grid\" Graphics", + "Type": "Package", + "Description": "Provides a number of user-level functions to work with \"grid\" graphics, notably to arrange multiple grid-based plots on a page, and draw tables.", + "VignetteBuilder": "knitr", + "Imports": [ "gtable", + "grid", + "grDevices", + "graphics", "utils" - ] + ], + "Suggests": [ + "ggplot2", + "egg", + "lattice", + "knitr", + "testthat" + ], + "RoxygenNote": "6.0.1", + "NeedsCompilation": "no", + "Author": "Baptiste Auguie [aut, cre], Anton Antonov [ctb]", + "Maintainer": "Baptiste Auguie ", + "Repository": "CRAN" }, "gridGraphics": { "Package": "gridGraphics", "Version": "0.5-1", "Source": "Repository", - "Requirements": [ - "graphics", - "grDevices", - "grid" - ] + "Title": "Redraw Base Graphics Using 'grid' Graphics", + "Authors@R": "c(person(\"Paul\", \"Murrell\", role = c(\"cre\", \"aut\"), email = \"paul@stat.auckland.ac.nz\"), person(\"Zhijian\", \"Wen\", role = \"aut\", email = \"jwen246@aucklanduni.ac.nz\"))", + "Description": "Functions to convert a page of plots drawn with the 'graphics' package into identical output drawn with the 'grid' package. The result looks like the original 'graphics'-based plot, but consists of 'grid' grobs and viewports that can then be manipulated with 'grid' functions (e.g., edit grobs and revisit viewports).", + "Depends": [ + "grid", + "graphics" + ], + "Imports": [ + "grDevices" + ], + "Suggests": [ + "magick (>= 1.3)", + "pdftools (>= 1.6)" + ], + "License": "GPL (>= 2)", + "URL": "https://github.com/pmur002/gridgraphics", + "NeedsCompilation": "no", + "Author": "Paul Murrell [cre, aut], Zhijian Wen [aut]", + "Maintainer": "Paul Murrell ", + "Repository": "CRAN" }, "gsl": { "Package": "gsl", "Version": "2.1-8", "Source": "Repository", - "Requirements": [ - "R" - ] + "Depends": [ + "R (>= 4.0.0)" + ], + "Title": "Wrapper for the Gnu Scientific Library", + "Authors@R": "c(person(given=c(\"Robin\", \"K. 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Hankin [aut, cre] (), Andrew Clausen [ctb] (multimin functionality), Duncan Murdoch [ctb] (qrng functions)", + "Repository": "CRAN" }, "gtable": { "Package": "gtable", "Version": "0.3.6", "Source": "Repository", - "Requirements": [ + "Title": "Arrange 'Grobs' in Tables", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Tools to make it easier to work with \"tables\" of 'grobs'. The 'gtable' package defines a 'gtable' grob class that specifies a grid along with a list of grobs and their placement in the grid. Further the package makes it easy to manipulate and combine 'gtable' objects so that complex compositions can be built up sequentially.", + "License": "MIT + file LICENSE", + "URL": "https://gtable.r-lib.org, https://github.com/r-lib/gtable", + "BugReports": "https://github.com/r-lib/gtable/issues", + "Depends": [ + "R (>= 4.0)" + ], + "Imports": [ "cli", "glue", "grid", "lifecycle", - "R", - "rlang", + "rlang (>= 1.1.0)", "stats" - ] + ], + "Suggests": [ + "covr", + "ggplot2", + "knitr", + "profvis", + "rmarkdown", + "testthat (>= 3.0.0)" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2024-10-25", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [aut, cre], Posit Software, PBC [cph, fnd]", + "Maintainer": "Thomas Lin Pedersen ", + "Repository": "CRAN" }, "gtools": { "Package": "gtools", "Version": "3.9.5", "Source": "Repository", - "Requirements": [ + "Title": "Various R Programming Tools", + "Description": "Functions to assist in R programming, including: - assist in developing, updating, and maintaining R and R packages ('ask', 'checkRVersion', 'getDependencies', 'keywords', 'scat'), - calculate the logit and inverse logit transformations ('logit', 'inv.logit'), - test if a value is missing, empty or contains only NA and NULL values ('invalid'), - manipulate R's .Last function ('addLast'), - define macros ('defmacro'), - detect odd and even integers ('odd', 'even'), - convert strings containing non-ASCII characters (like single quotes) to plain ASCII ('ASCIIfy'), - perform a binary search ('binsearch'), - sort strings containing both numeric and character components ('mixedsort'), - create a factor variable from the quantiles of a continuous variable ('quantcut'), - enumerate permutations and combinations ('combinations', 'permutation'), - calculate and convert between fold-change and log-ratio ('foldchange', 'logratio2foldchange', 'foldchange2logratio'), - calculate probabilities and generate random numbers from Dirichlet distributions ('rdirichlet', 'ddirichlet'), - apply a function over adjacent subsets of a vector ('running'), - modify the TCP_NODELAY ('de-Nagle') flag for socket objects, - efficient 'rbind' of data frames, even if the column names don't match ('smartbind'), - generate significance stars from p-values ('stars.pval'), - convert characters to/from ASCII codes ('asc', 'chr'), - convert character vector to ASCII representation ('ASCIIfy'), - apply title capitalization rules to a character vector ('capwords').", + "Authors@R": "c(person(\"Gregory R.\", \"Warnes\", role = \"aut\"), person(\"Ben\", \"Bolker\", role = c(\"aut\", \"cre\"), email = \"bolker@mcmaster.ca\", comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"Thomas\", \"Lumley\", role = \"aut\"), person(\"Arni\", \"Magnusson\", role = \"aut\"), person(\"Bill\", \"Venables\", role = \"aut\"), person(\"Genei\", \"Ryodan\", role = \"aut\"), person(\"Steffen\", \"Moeller\", role = \"aut\"), person(\"Ian\", \"Wilson\", role = \"ctb\"), person(\"Mark\", \"Davis\", role = \"ctb\"), person(\"Nitin\", \"Jain\", role=\"ctb\"), person(\"Scott\", \"Chamberlain\", role = \"ctb\"))", + "License": "GPL-2", + "Depends": [ "methods", "stats", "utils" - ] + ], + "URL": "https://github.com/r-gregmisc/gtools", + "BugReports": "https://github.com/r-gregmisc/gtools/issues", + "Language": "en-US", + "Suggests": [ + "car", + "gplots", + "knitr", + "rstudioapi", + "SGP", + "taxize" + ], + "RoxygenNote": "7.2.3", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Gregory R. 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Configuration functions make it easy to control additional request components (authenticate(), add_headers() and so on).", + "License": "MIT + file LICENSE", + "URL": "https://httr.r-lib.org/, https://github.com/r-lib/httr", + "BugReports": "https://github.com/r-lib/httr/issues", + "Depends": [ + "R (>= 3.5)" + ], + "Imports": [ + "curl (>= 5.0.2)", + "jsonlite", + "mime", + "openssl (>= 0.8)", + "R6" + ], + "Suggests": [ + "covr", + "httpuv", + "jpeg", + "knitr", + "png", + "readr", + "rmarkdown", + "testthat (>= 0.8.0)", + "xml2" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.3", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut, cre], Posit, PBC [cph, fnd]", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" }, "iBreakDown": { "Package": "iBreakDown", "Version": "2.1.2", "Source": "Repository", - "Requirements": [ - "ggplot2", - "R" - ] - }, - "igraph": { - "Package": "igraph", - "Version": "2.1.4", - "Source": "Repository", - "Requirements": [ - "cli", - "cpp11", + "Title": "Model Agnostic Instance Level Variable Attributions", + "Authors@R": "c(person(\"Przemyslaw\", \"Biecek\", email = \"przemyslaw.biecek@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-8423-1823\")), person(\"Alicja\", \"Gosiewska\", role = \"aut\", comment = c(ORCID = \"0000-0001-6563-5742\")), person(\"Hubert\", \"Baniecki\", role = \"aut\", comment = c(ORCID = \"0000-0001-6661-5364\")), person(\"Adam\", \"Izdebski\", role = \"aut\"), person(\"Dariusz\", \"Komosinski\", role = \"ctb\"))", + "Description": "Model agnostic tool for decomposition of predictions from black boxes. Supports additive attributions and attributions with interactions. The Break Down Table shows contributions of every variable to a final prediction. The Break Down Plot presents variable contributions in a concise graphical way. This package works for classification and regression models. It is an extension of the 'breakDown' package (Staniak and Biecek 2018) , with new and faster strategies for orderings. It supports interactions in explanations and has interactive visuals (implemented with 'D3.js' library). The methodology behind is described in the 'iBreakDown' article (Gosiewska and Biecek 2019) This package is a part of the 'DrWhy.AI' universe (Biecek 2018) .", + "Depends": [ + "R (>= 3.5)" + ], + "License": "GPL-3", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.2", + "Imports": [ + "ggplot2" + ], + "Suggests": [ + "DALEX", + "knitr", + "rmarkdown", + "randomForest", + "e1071", + "ranger", + "nnet", + "testthat", + "r2d3", + "jsonlite", + "covr" + ], + "VignetteBuilder": "knitr", + "URL": "https://ModelOriented.github.io/iBreakDown/, https://github.com/ModelOriented/iBreakDown", + "BugReports": "https://github.com/ModelOriented/iBreakDown/issues", + "NeedsCompilation": "no", + "Author": "Przemyslaw Biecek [aut, cre] (), Alicja Gosiewska [aut] (), Hubert Baniecki [aut] (), Adam Izdebski [aut], Dariusz Komosinski [ctb]", + "Maintainer": "Przemyslaw Biecek ", + "Repository": "CRAN" + }, + "igraph": { + "Package": "igraph", + "Version": "2.1.4", + "Source": "Repository", + "Title": "Network Analysis and Visualization", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Tamás\", \"Nepusz\", , \"ntamas@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-1451-338X\")), person(\"Vincent\", \"Traag\", role = \"aut\", comment = c(ORCID = \"0000-0003-3170-3879\")), person(\"Szabolcs\", \"Horvát\", , \"szhorvat@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-3100-523X\")), person(\"Fabio\", \"Zanini\", , \"fabio.zanini@unsw.edu.au\", role = \"aut\", comment = c(ORCID = \"0000-0001-7097-8539\")), person(\"Daniel\", \"Noom\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Maëlle\", \"Salmon\", role = \"ctb\"), person(\"Michael\", \"Antonov\", role = \"ctb\"), person(\"Chan Zuckerberg Initiative\", role = \"fnd\") )", + "Description": "Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.", + "License": "GPL (>= 2)", + "URL": "https://r.igraph.org/, https://igraph.org/, https://igraph.discourse.group/", + "BugReports": "https://github.com/igraph/rigraph/issues", + "Depends": [ + "methods", + "R (>= 3.5.0)" + ], + "Imports": [ + "cli", "graphics", "grDevices", "lifecycle", "magrittr", "Matrix", - "methods", - "pkgconfig", - "R", + "pkgconfig (>= 2.0.0)", "rlang", "stats", "utils", "vctrs" - ] + ], + "Suggests": [ + "ape (>= 5.7-0.1)", + "callr", + "decor", + "digest", + "igraphdata", + "knitr", + "rgl (>= 1.3.14)", + "rmarkdown", + "scales", + "stats4", + "tcltk", + "testthat", + "vdiffr", + "withr" + ], + "Enhances": [ + "graph" + ], + "LinkingTo": [ + "cpp11 (>= 0.5.0)" + ], + "VignetteBuilder": "knitr", + "Config/Needs/build": "roxygen2, devtools, irlba, pkgconfig, igraph/igraph.r2cdocs, moodymudskipper/devtag", + "Config/Needs/coverage": "covr", + "Config/Needs/website": "readr", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", + "Config/testthat/start-first": "vs-es, scan, vs-operators, weakref, watts.strogatz.game", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2.9000", + "SystemRequirements": "libxml2 (optional), glpk (>= 4.57, optional)", + "NeedsCompilation": "yes", + "Author": "Gábor Csárdi [aut] (), Tamás Nepusz [aut] (), Vincent Traag [aut] (), Szabolcs Horvát [aut] (), Fabio Zanini [aut] (), Daniel Noom [aut], Kirill Müller [aut, cre] (), Maëlle Salmon [ctb], Michael Antonov [ctb], Chan Zuckerberg Initiative [fnd]", + "Maintainer": "Kirill Müller ", + "Repository": "CRAN" }, "ingredients": { "Package": "ingredients", "Version": "2.3.0", "Source": "Repository", - "Requirements": [ + "Title": "Effects and Importances of Model Ingredients", + "Authors@R": "c(person(\"Przemyslaw\", \"Biecek\", email = \"przemyslaw.biecek@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-8423-1823\")), person(\"Hubert\", \"Baniecki\", role = \"aut\", comment = c(ORCID = \"0000-0001-6661-5364\")), person(\"Adam\", \"Izdebski\", role = \"ctb\"))", + "Description": "Collection of tools for assessment of feature importance and feature effects. 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CRAN package 'coin' implements all user interfaces and is ready to be used by anyone.", + "Depends": [ + "R (>= 3.4.0)" + ], + "Suggests": [ + "coin" + ], + "Imports": [ + "stats", + "mvtnorm" + ], + "LinkingTo": [ + "mvtnorm" + ], + "NeedsCompilation": "yes", + "License": "GPL-2", + "Author": "Torsten Hothorn [aut, cre] (), Henric Winell [aut] ()", + "Maintainer": "Torsten Hothorn ", + "Repository": "CRAN" }, "lifecycle": { "Package": "lifecycle", "Version": "1.0.4", "Source": "Repository", - "Requirements": [ - "cli", + "Title": "Manage the Life Cycle of your Package Functions", + "Authors@R": "c( person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Manage the life cycle of your exported functions with shared conventions, documentation badges, and user-friendly deprecation warnings.", + "License": "MIT + file LICENSE", + "URL": "https://lifecycle.r-lib.org/, https://github.com/r-lib/lifecycle", + "BugReports": "https://github.com/r-lib/lifecycle/issues", + "Depends": [ + "R (>= 3.6)" + ], + "Imports": [ + "cli (>= 3.4.0)", "glue", - "R", - "rlang" - ] + "rlang (>= 1.1.0)" + ], + "Suggests": [ + "covr", + "crayon", + "knitr", + "lintr", + "rmarkdown", + "testthat (>= 3.0.1)", + "tibble", + "tidyverse", + "tools", + "vctrs", + "withr" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate, usethis", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.1", + "NeedsCompilation": "no", + "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut] (), Posit Software, PBC [cph, fnd]", + "Maintainer": "Lionel Henry ", + "Repository": "CRAN" }, "magrittr": { "Package": "magrittr", "Version": "2.0.3", "Source": "Repository", - "Requirements": [ - "R" - ] + "Type": "Package", + "Title": "A Forward-Pipe Operator for R", + "Authors@R": "c( person(\"Stefan Milton\", \"Bache\", , \"stefan@stefanbache.dk\", role = c(\"aut\", \"cph\"), comment = \"Original author and creator of magrittr\"), person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@rstudio.com\", role = \"cre\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", + "Description": "Provides a mechanism for chaining commands with a new forward-pipe operator, %>%. This operator will forward a value, or the result of an expression, into the next function call/expression. There is flexible support for the type of right-hand side expressions. For more information, see package vignette. To quote Rene Magritte, \"Ceci n'est pas un pipe.\"", + "License": "MIT + file LICENSE", + "URL": "https://magrittr.tidyverse.org, https://github.com/tidyverse/magrittr", + "BugReports": "https://github.com/tidyverse/magrittr/issues", + "Depends": [ + "R (>= 3.4.0)" + ], + "Suggests": [ + "covr", + "knitr", + "rlang", + "rmarkdown", + "testthat" + ], + "VignetteBuilder": "knitr", + "ByteCompile": "Yes", + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.1.2", + "NeedsCompilation": "yes", + "Author": "Stefan Milton Bache [aut, cph] (Original author and creator of magrittr), Hadley Wickham [aut], Lionel Henry [cre], RStudio [cph, fnd]", + "Maintainer": "Lionel Henry ", + "Repository": "CRAN" }, "mclust": { "Package": "mclust", "Version": "6.1.1", "Source": "Repository", - "Requirements": [ - "graphics", - "grDevices", - "R", + "Date": "2024-04-29", + "Title": "Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation", + "Description": "Gaussian finite mixture models fitted via EM algorithm for model-based clustering, classification, and density estimation, including Bayesian regularization, dimension reduction for visualisation, and resampling-based inference.", + "Authors@R": "c(person(\"Chris\", \"Fraley\", role = \"aut\"), person(\"Adrian E.\", \"Raftery\", role = \"aut\", comment = c(ORCID = \"0000-0002-6589-301X\")), person(\"Luca\", \"Scrucca\", role = c(\"aut\", \"cre\"), email = \"luca.scrucca@unipg.it\", comment = c(ORCID = \"0000-0003-3826-0484\")), person(\"Thomas Brendan\", \"Murphy\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5668-7046\")), person(\"Michael\", \"Fop\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3936-2757\")))", + "Depends": [ + "R (>= 3.0)" + ], + "Imports": [ "stats", - "utils" - ] + "utils", + "graphics", + "grDevices" + ], + "Suggests": [ + "knitr (>= 1.4)", + "rmarkdown (>= 2.10)", + "mix (>= 1.0)", + "geometry (>= 0.4)", + "MASS" + ], + "License": "GPL (>= 2)", + "URL": "https://mclust-org.github.io/mclust/", + "VignetteBuilder": "knitr", + "Repository": "CRAN", + "ByteCompile": "true", + "NeedsCompilation": "yes", + "LazyData": "yes", + "Encoding": "UTF-8", + "Author": "Chris Fraley [aut], Adrian E. Raftery [aut] (), Luca Scrucca [aut, cre] (), Thomas Brendan Murphy [ctb] (), Michael Fop [ctb] ()", + "Maintainer": "Luca Scrucca " }, "mgcv": { "Package": "mgcv", "Version": "1.9-3", "Source": "Repository", - "Requirements": [ + "Authors@R": "person(given = \"Simon\", family = \"Wood\", role = c(\"aut\", \"cre\"), email = \"simon.wood@r-project.org\")", + "Title": "Mixed GAM Computation Vehicle with Automatic Smoothness Estimation", + "Description": "Generalized additive (mixed) models, some of their extensions and other generalized ridge regression with multiple smoothing parameter estimation by (Restricted) Marginal Likelihood, Generalized Cross Validation and similar, or using iterated nested Laplace approximation for fully Bayesian inference. See Wood (2017) for an overview. Includes a gam() function, a wide variety of smoothers, 'JAGS' support and distributions beyond the exponential family.", + "Priority": "recommended", + "Depends": [ + "R (>= 3.6.0)", + "nlme (>= 3.1-64)" + ], + "Imports": [ + "methods", + "stats", "graphics", "Matrix", - "methods", - "nlme", - "R", "splines", - "stats", "utils" - ] + ], + "Suggests": [ + "parallel", + "survival", + "MASS" + ], + "LazyLoad": "yes", + "ByteCompile": "yes", + "License": "GPL (>= 2)", + "NeedsCompilation": "yes", + "Author": "Simon Wood [aut, cre]", + "Maintainer": "Simon Wood ", + "Repository": "CRAN" + }, + "mime": { + "Package": "mime", + "Version": "0.13", + "Source": "Repository", + "Type": "Package", + "Title": "Map Filenames to MIME Types", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Jeffrey\", \"Horner\", role = \"ctb\"), person(\"Beilei\", \"Bian\", role = \"ctb\") )", + "Description": "Guesses the MIME type from a filename extension using the data derived from /etc/mime.types in UNIX-type systems.", + "Imports": [ + "tools" + ], + "License": "GPL", + "URL": "https://github.com/yihui/mime", + "BugReports": "https://github.com/yihui/mime/issues", + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Yihui Xie [aut, cre] (, https://yihui.org), Jeffrey Horner [ctb], Beilei Bian [ctb]", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" }, "modeltools": { "Package": "modeltools", "Version": "0.2-24", "Source": "Repository", - "Requirements": [ - "methods", + "Title": "Tools and Classes for Statistical Models", + "Date": "2025-05-02", + "Authors@R": "c(person(given = \"Torsten\", family = \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")), person(given = \"Friedrich\", family = \"Leisch\", role = \"aut\", comment = c(ORCID = \"0000-0001-7278-1983\")), person(given = \"Achim\", family = \"Zeileis\", role = \"aut\", comment = c(ORCID = \"0000-0003-0918-3766\")))", + "Description": "A collection of tools to deal with statistical models. The functionality is experimental and the user interface is likely to change in the future. The documentation is rather terse, but packages `coin' and `party' have some working examples. However, if you find the implemented ideas interesting we would be very interested in a discussion of this proposal. Contributions are more than welcome!", + "Depends": [ "stats", "stats4" - ] + ], + "Imports": [ + "methods" + ], + "LazyLoad": "yes", + "License": "GPL-2", + "NeedsCompilation": "no", + "Author": "Torsten Hothorn [aut, cre] (ORCID: ), Friedrich Leisch [aut] (ORCID: ), Achim Zeileis [aut] (ORCID: )", + "Maintainer": "Torsten Hothorn ", + "Repository": "CRAN" }, "moments": { "Package": "moments", "Version": "0.14.1", "Source": "Repository", - "Requirements": [] + "Type": "Package", + "Title": "Moments, Cumulants, Skewness, Kurtosis and Related Tests", + "Date": "2015-01-05", + "Author": "Lukasz Komsta , Frederick Novomestky ", + "Maintainer": "Lukasz Komsta ", + "Description": "Functions to calculate: moments, Pearson's kurtosis, Geary's kurtosis and skewness; tests related to them (Anscombe-Glynn, D'Agostino, Bonett-Seier).", + "License": "GPL (>= 2)", + "URL": "https://www.r-project.org, http://www.komsta.net/", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "mvnormalTest": { "Package": "mvnormalTest", "Version": "1.0.1", "Source": "Repository", - "Requirements": [ - "copula", - "moments", + "Type": "Package", + "Title": "Powerful Tests for Multivariate Normality", + "Date": "2025-06-02", + "Authors@R": "c( person(\"Yian\", \"Zhang\", email = \"yz2777@nyu.edu\", role = c(\"aut\",\"cre\")), person(\"Ming\", \"Zhou\", email = \"zhouming1027@gmail.com\", role = \"aut\"), person(\"Yongzhao\", \"Shao\", email = \"yongzhao.shao@nyulangone.org\", role = \"aut\"))", + "Author": "Yian Zhang [aut, cre], Ming Zhou [aut], Yongzhao Shao [aut]", + "Maintainer": "Yian Zhang ", + "Description": "A simple informative powerful test (mvnTest()) for multivariate normality proposed by Zhou and Shao (2014) , which combines kurtosis with Shapiro-Wilk test that is easy for biomedical researchers to understand and easy to implement in all dimensions. This package also contains some other multivariate normality tests including Fattorini's FA test (faTest()), Mardia's skewness and kurtosis test (mardia()), Henze-Zirkler's test (mhz()), Bowman and Shenton's test (msk()), Royston’s H test (msw()), and Villasenor-Alva and Gonzalez-Estrada's test (msw()). Empirical power calculation functions for these tests are also provided. In addition, this package includes some functions to generate several types of multivariate distributions mentioned in Zhou and Shao (2014).", + "License": "GPL (>= 2)", + "Encoding": "UTF-8", + "Imports": [ + "stats", "nortest", - "R", - "stats" - ] + "moments", + "copula" + ], + "Suggests": [ + "knitr" + ], + "Depends": [ + "R (>= 3.5.0)" + ], + "Language": "en-US", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "mvtnorm": { "Package": "mvtnorm", "Version": "1.3-3", "Source": "Repository", - "Requirements": [ - "R", + "Title": "Multivariate Normal and t Distributions", + "Date": "2025-01-09", + "Authors@R": "c(person(\"Alan\", \"Genz\", role = \"aut\"), person(\"Frank\", \"Bretz\", role = \"aut\"), person(\"Tetsuhisa\", \"Miwa\", role = \"aut\"), person(\"Xuefei\", \"Mi\", role = \"aut\"), person(\"Friedrich\", \"Leisch\", role = \"ctb\"), person(\"Fabian\", \"Scheipl\", role = \"ctb\"), person(\"Bjoern\", \"Bornkamp\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6294-8185\")), person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")))", + "Description": "Computes multivariate normal and t probabilities, quantiles, random deviates, and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae parameterised by Cholesky factors of covariance or precision matrices are implemented for interval-censored and exact data, or a mix thereof. Score functions for these log-likelihoods are available. A class representing multiple lower triangular matrices and corresponding methods are part of this package.", + "Imports": [ "stats" - ] + ], + "Depends": [ + "R(>= 3.5.0)" + ], + "Suggests": [ + "qrng", + "numDeriv" + ], + "License": "GPL-2", + "URL": "http://mvtnorm.R-forge.R-project.org", + "NeedsCompilation": "yes", + "Author": "Alan Genz [aut], Frank Bretz [aut], Tetsuhisa Miwa [aut], Xuefei Mi [aut], Friedrich Leisch [ctb], Fabian Scheipl [ctb], Bjoern Bornkamp [ctb] (), Martin Maechler [ctb] (), Torsten Hothorn [aut, cre] ()", + "Maintainer": "Torsten Hothorn ", + "Repository": "CRAN" }, "network": { "Package": "network", "Version": "1.19.0", "Source": "Repository", - "Requirements": [ - "magrittr", - "R", - "statnet.common", - "stats", - "tibble", + "Date": "2024-12-08", + "Title": "Classes for Relational Data", + "Authors@R": "c( person(\"Carter T.\", \"Butts\", role=c(\"aut\",\"cre\"), email=\"buttsc@uci.edu\"), person(\"David\", \"Hunter\", role=c(\"ctb\"), email=\"dhunter@stat.psu.edu\"), person(\"Mark\", \"Handcock\", role=c(\"ctb\"), email=\"handcock@stat.ucla.edu\"), person(\"Skye\", \"Bender-deMoll\", role=c(\"ctb\"), email=\"skyebend@uw.edu\"), person(\"Jeffrey\", \"Horner\", role=c(\"ctb\"), email=\"jeffrey.horner@gmail.com\"), person(\"Li\", \"Wang\", role=c(\"ctb\"), email=\"lxwang@uw.edu\"), person(\"Pavel N.\", \"Krivitsky\", role=c(\"ctb\"), email=\"pavel@statnet.org\", comment=c(ORCID=\"0000-0002-9101-3362\")), person(\"Brendan\", \"Knapp\", role=c(\"ctb\"), email=\"brendan.g.knapp@gmail.com\", comment=c(ORCID=\"0000-0003-3284-4972\")), person(\"Michał\", \"Bojanowski\", role=c(\"ctb\"), email = \"michal2992@gmail.com\", comment = c(ORCID = \"0000-0001-7503-852X\")), person(\"Chad\", \"Klumb\", role=c(\"ctb\"), email=\"cklumb@gmail.com\"))", + "Maintainer": "Carter T. Butts ", + "Depends": [ + "R (>= 2.10)", "utils" - ] + ], + "Imports": [ + "tibble", + "magrittr", + "statnet.common (>= 4.5)", + "stats" + ], + "Suggests": [ + "sna", + "testthat", + "covr" + ], + "Description": "Tools to create and modify network objects. The network class can represent a range of relational data types, and supports arbitrary vertex/edge/graph attributes.", + "License": "GPL (>= 2)", + "URL": "https://statnet.org/", + "RoxygenNote": "7.3.2.9000", + "Collate": "'access.R' 'as.edgelist.R' 'assignment.R' 'coercion.R' 'constructors.R' 'dataframe.R' 'fileio.R' 'layout.R' 'misc.R' 'network-package.R' 'operators.R' 'plot.R' 'printsum.R' 'zzz.R'", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Carter T. Butts [aut, cre], David Hunter [ctb], Mark Handcock [ctb], Skye Bender-deMoll [ctb], Jeffrey Horner [ctb], Li Wang [ctb], Pavel N. Krivitsky [ctb] (), Brendan Knapp [ctb] (), Michał Bojanowski [ctb] (), Chad Klumb [ctb]", + "Repository": "CRAN" }, "neuralnet": { "Package": "neuralnet", "Version": "1.44.2", "Source": "Repository", - "Requirements": [ - "Deriv", - "grDevices", + "Type": "Package", + "Title": "Training of Neural Networks", + "Date": "2019-02-07", + "Authors@R": "c( person(given=\"Stefan\", family=\"Fritsch\", role=\"aut\"), person(given=\"Frauke\", family=\"Guenther\", role=c(\"aut\")), person(given=\"Marvin N.\", family=\"Wright\", role=c(\"aut\",\"cre\"),email=\"wright@leibniz-bips.de\"), person(given=\"Marc\", family=\"Suling\", role=\"ctb\"),\t person(given=\"Sebastian M.\", family=\"Mueller\", role = \"ctb\"))", + "Depends": [ + "R (>= 2.9.0)" + ], + "Imports": [ "grid", "MASS", - "R", + "grDevices", "stats", - "utils" - ] + "utils", + "Deriv" + ], + "Description": "Training of neural networks using backpropagation, resilient backpropagation with (Riedmiller, 1994) or without weight backtracking (Riedmiller and Braun, 1993) or the modified globally convergent version by Anastasiadis et al. (2005). The package allows flexible settings through custom-choice of error and activation function. Furthermore, the calculation of generalized weights (Intrator O & Intrator N, 1993) is implemented.", + "License": "GPL (>= 2)", + "Suggests": [ + "testthat" + ], + "URL": "https://github.com/bips-hb/neuralnet", + "BugReports": "https://github.com/bips-hb/neuralnet/issues", + "RoxygenNote": "6.1.0", + "NeedsCompilation": "no", + "Author": "Stefan Fritsch [aut], Frauke Guenther [aut], Marvin N. Wright [aut, cre], Marc Suling [ctb], Sebastian M. Mueller [ctb]", + "Maintainer": "Marvin N. Wright ", + "Repository": "CRAN" }, "nlme": { "Package": "nlme", "Version": "3.1-168", "Source": "Repository", - "Requirements": [ + "Date": "2025-03-31", + "Priority": "recommended", + "Title": "Linear and Nonlinear Mixed Effects Models", + "Authors@R": "c(person(\"José\", \"Pinheiro\", role = \"aut\", comment = \"S version\"), person(\"Douglas\", \"Bates\", role = \"aut\", comment = \"up to 2007\"), person(\"Saikat\", \"DebRoy\", role = \"ctb\", comment = \"up to 2002\"), person(\"Deepayan\", \"Sarkar\", role = \"ctb\", comment = \"up to 2005\"), person(\"EISPACK authors\", role = \"ctb\", comment = \"src/rs.f\"), person(\"Siem\", \"Heisterkamp\", role = \"ctb\", comment = \"Author fixed sigma\"), person(\"Bert\", \"Van Willigen\",role = \"ctb\", comment = \"Programmer fixed sigma\"), person(\"Johannes\", \"Ranke\", role = \"ctb\", comment = \"varConstProp()\"), person(\"R Core Team\", email = \"R-core@R-project.org\", role = c(\"aut\", \"cre\"), comment = c(ROR = \"02zz1nj61\")))", + "Contact": "see 'MailingList'", + "Description": "Fit and compare Gaussian linear and nonlinear mixed-effects models.", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ "graphics", - "lattice", - "R", "stats", - "utils" - ] + "utils", + "lattice" + ], + "Suggests": [ + "MASS", + "SASmixed" + ], + "LazyData": "yes", + "Encoding": "UTF-8", + "License": "GPL (>= 2)", + "BugReports": "https://bugs.r-project.org", + "MailingList": "R-help@r-project.org", + "URL": "https://svn.r-project.org/R-packages/trunk/nlme/", + "NeedsCompilation": "yes", + "Author": "José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre] (02zz1nj61)", + "Maintainer": "R Core Team ", + "Repository": "CRAN" }, "nnet": { "Package": "nnet", "Version": "7.3-20", "Source": "Repository", - "Requirements": [ - "R", + "Priority": "recommended", + "Date": "2025-01-01", + "Depends": [ + "R (>= 3.0.0)", "stats", "utils" - ] + ], + "Suggests": [ + "MASS" + ], + "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Brian.Ripley@R-project.org\"), person(\"William\", \"Venables\", role = \"cph\"))", + "Description": "Software for feed-forward neural networks with a single hidden layer, and for multinomial log-linear models.", + "Title": "Feed-Forward Neural Networks and Multinomial Log-Linear Models", + "ByteCompile": "yes", + "License": "GPL-2 | GPL-3", + "URL": "http://www.stats.ox.ac.uk/pub/MASS4/", + "NeedsCompilation": "yes", + "Author": "Brian Ripley [aut, cre, cph], William Venables [cph]", + "Maintainer": "Brian Ripley ", + "Repository": "CRAN" }, "nortest": { "Package": "nortest", "Version": "1.0-4", "Source": "Repository", - "Requirements": [ + "Title": "Tests for Normality", + "Date": "2015-07-29", + "Description": "Five omnibus tests for testing the composite hypothesis of normality.", + "License": "GPL (>= 2)", + "Authors@R": "c(person(\"Juergen\", \"Gross\", role = \"aut\", email = \"gross@statistik.tu-dortmund.de\"), person(\"Uwe\", \"Ligges\", role = c(\"aut\", \"cre\"), email = \"ligges@statistik.tu-dortmund.de\"))", + "Imports": [ "stats" - ] + ], + "Author": "Juergen Gross [aut], Uwe Ligges [aut, cre]", + "Maintainer": "Uwe Ligges ", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "numDeriv": { "Package": "numDeriv", "Version": "2016.8-1.1", "Source": "Repository", - "Requirements": [ - "R" - ] + "Title": "Accurate Numerical Derivatives", + "Description": "Methods for calculating (usually) accurate numerical first and second order derivatives. Accurate calculations are done using 'Richardson''s' extrapolation or, when applicable, a complex step derivative is available. A simple difference method is also provided. Simple difference is (usually) less accurate but is much quicker than 'Richardson''s' extrapolation and provides a useful cross-check. Methods are provided for real scalar and vector valued functions.", + "Depends": [ + "R (>= 2.11.1)" + ], + "LazyLoad": "yes", + "ByteCompile": "yes", + "License": "GPL-2", + "Copyright": "2006-2011, Bank of Canada. 2012-2016, Paul Gilbert", + "Author": "Paul Gilbert and Ravi Varadhan", + "Maintainer": "Paul Gilbert ", + "URL": "http://optimizer.r-forge.r-project.org/", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "officer": { "Package": "officer", "Version": "0.6.10", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Manipulation of Microsoft Word and PowerPoint Documents", + "Authors@R": "c( person(\"David\", \"Gohel\", , \"david.gohel@ardata.fr\", role = c(\"aut\", \"cre\")), person(\"Stefan\", \"Moog\", , \"moogs@gmx.de\", role = \"aut\"), person(\"Mark\", \"Heckmann\", , \"heckmann.mark@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-0736-7417\")), person(\"ArData\", role = \"cph\"), person(\"Frank\", \"Hangler\", , \"frank@plotandscatter.com\", role = \"ctb\", comment = \"function body_replace_all_text\"), person(\"Liz\", \"Sander\", , \"lsander@civisanalytics.com\", role = \"ctb\", comment = \"several documentation fixes\"), person(\"Anton\", \"Victorson\", , \"anton@victorson.se\", role = \"ctb\", comment = \"fixes xml structures\"), person(\"Jon\", \"Calder\", , \"jonmcalder@gmail.com\", role = \"ctb\", comment = \"update vignettes\"), person(\"John\", \"Harrold\", , \"john.m.harrold@gmail.com\", role = \"ctb\", comment = \"function annotate_base\"), person(\"John\", \"Muschelli\", , \"muschellij2@gmail.com\", role = \"ctb\", comment = \"google doc compatibility\"), person(\"Bill\", \"Denney\", , \"wdenney@humanpredictions.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5759-428X\", \"function as.matrix.rpptx\")), person(\"Nikolai\", \"Beck\", , \"beck.nikolai@gmail.com\", role = \"ctb\", comment = \"set speaker notes for .pptx documents\"), person(\"Greg\", \"Leleu\", , \"gregoire.leleu@gmail.com\", role = \"ctb\", comment = \"fields functionality in ppt\"), person(\"Majid\", \"Eismann\", role = \"ctb\"), person(\"Hongyuan\", \"Jia\", , \"hongyuanjia@cqust.edu.cn\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0075-8183\")), person(\"Michael\", \"Stackhouse\", , \"mike.stackhouse@atorusresearch.com\", role = \"ctb\") )", + "Description": "Access and manipulate 'Microsoft Word', 'RTF' and 'Microsoft PowerPoint' documents from R. The package focuses on tabular and graphical reporting from R; it also provides two functions that let users get document content into data objects. A set of functions lets add and remove images, tables and paragraphs of text in new or existing documents. The package does not require any installation of Microsoft products to be able to write Microsoft files.", + "License": "MIT + file LICENSE", + "URL": "https://ardata-fr.github.io/officeverse/, https://davidgohel.github.io/officer/", + "BugReports": "https://github.com/davidgohel/officer/issues", + "Imports": [ "cli", "graphics", "grDevices", @@ -1091,435 +3417,1783 @@ "stats", "utils", "uuid", - "xml2", - "zip" - ] + "xml2 (>= 1.1.0)", + "zip (>= 2.1.0)" + ], + "Suggests": [ + "devEMF", + "doconv (>= 0.3.0)", + "gdtools", + "ggplot2", + "knitr", + "magick", + "rmarkdown", + "rsvg", + "testthat", + "withr" + ], + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "Collate": "'core_properties.R' 'custom_properties.R' 'defunct.R' 'dev-utils.R' 'docx_add.R' 'docx_comments.R' 'docx_cursor.R' 'docx_part.R' 'docx_replace.R' 'docx_section.R' 'docx_settings.R' 'empty_content.R' 'formatting_properties.R' 'fortify_docx.R' 'fortify_pptx.R' 'knitr_utils.R' 'officer.R' 'ooxml.R' 'ooxml_block_objects.R' 'ooxml_run_objects.R' 'openxml_content_type.R' 'openxml_document.R' 'pack_folder.R' 'ph_location.R' 'post-proc.R' 'ppt_class_dir_collection.R' 'ppt_classes.R' 'ppt_notes.R' 'ppt_ph_dedupe_layout.R' 'ppt_ph_manipulate.R' 'ppt_ph_rename_layout.R' 'ppt_ph_with_methods.R' 'pptx_informations.R' 'pptx_layout_helper.R' 'pptx_matrix.R' 'utils.R' 'pptx_slide_manip.R' 'read_docx.R' 'read_docx_styles.R' 'read_pptx.R' 'read_xlsx.R' 'relationship.R' 'rtf.R' 'shape_properties.R' 'shorcuts.R' 'docx_append_context.R' 'utils-xml.R' 'deprecated.R'", + "NeedsCompilation": "no", + "Author": "David Gohel [aut, cre], Stefan Moog [aut], Mark Heckmann [aut] (ORCID: ), ArData [cph], Frank Hangler [ctb] (function body_replace_all_text), Liz Sander [ctb] (several documentation fixes), Anton Victorson [ctb] (fixes xml structures), Jon Calder [ctb] (update vignettes), John Harrold [ctb] (function annotate_base), John Muschelli [ctb] (google doc compatibility), Bill Denney [ctb] (ORCID: , function as.matrix.rpptx), Nikolai Beck [ctb] (set speaker notes for .pptx documents), Greg Leleu [ctb] (fields functionality in ppt), Majid Eismann [ctb], Hongyuan Jia [ctb] (ORCID: ), Michael Stackhouse [ctb]", + "Maintainer": "David Gohel ", + "Repository": "CRAN" }, "openssl": { "Package": "openssl", "Version": "2.3.3", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Toolkit for Encryption, Signatures and Certificates Based on OpenSSL", + "Authors@R": "c(person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Oliver\", \"Keyes\", role = \"ctb\"))", + "Description": "Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers. Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic signatures can either be created and verified manually or via x509 certificates. AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric (public key) encryption or EC for Diffie Hellman. High-level envelope functions combine RSA and AES for encrypting arbitrary sized data. Other utilities include key generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random number generator, and 'bignum' math methods for manually performing crypto calculations on large multibyte integers.", + "License": "MIT + file LICENSE", + "URL": "https://jeroen.r-universe.dev/openssl", + "BugReports": "https://github.com/jeroen/openssl/issues", + "SystemRequirements": "OpenSSL >= 1.0.2", + "VignetteBuilder": "knitr", + "Imports": [ "askpass" - ] + ], + "Suggests": [ + "curl", + "testthat (>= 2.1.0)", + "digest", + "knitr", + "rmarkdown", + "jsonlite", + "jose", + "sodium" + ], + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Oliver Keyes [ctb]", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" }, "partykit": { "Package": "partykit", "Version": "1.2-24", "Source": "Repository", - "Requirements": [ - "Formula", + "Title": "A Toolkit for Recursive Partytioning", + "Date": "2025-05-02", + "Authors@R": "c(person(given = \"Torsten\", family = \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")), person(given = \"Heidi\", family = \"Seibold\", role = \"ctb\", email = \"heidi@seibold.co\", comment = c(ORCID = \"0000-0002-8960-9642\")), person(given = \"Achim\", family = \"Zeileis\", role = \"aut\", email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")))", + "Description": "A toolkit with infrastructure for representing, summarizing, and visualizing tree-structured regression and classification models. This unified infrastructure can be used for reading/coercing tree models from different sources ('rpart', 'RWeka', 'PMML') yielding objects that share functionality for print()/plot()/predict() methods. Furthermore, new and improved reimplementations of conditional inference trees (ctree()) and model-based recursive partitioning (mob()) from the 'party' package are provided based on the new infrastructure. A description of this package was published by Hothorn and Zeileis (2015) .", + "Depends": [ + "R (>= 3.5.0)", "graphics", - "grDevices", "grid", - "inum", - "libcoin", - "mvtnorm", - "R", - "rpart", + "libcoin (>= 1.0-0)", + "mvtnorm" + ], + "Imports": [ + "grDevices", "stats", + "utils", "survival", - "utils" - ] + "Formula (>= 1.2-1)", + "inum (>= 1.0-0)", + "rpart (>= 4.1-11)" + ], + "Suggests": [ + "XML", + "pmml", + "rJava", + "sandwich", + "strucchange", + "vcd", + "AER", + "mlbench", + "TH.data (>= 1.0-3)", + "coin (>= 1.1-0)", + "RWeka (>= 0.4-19)", + "datasets", + "parallel", + "psychotools (>= 0.3-0)", + "psychotree", + "party (>= 1.3-0)", + "randomForest" + ], + "LazyData": "yes", + "License": "GPL-2 | GPL-3", + "URL": "http://partykit.r-forge.r-project.org/partykit/", + "RoxygenNote": "6.1.1", + "NeedsCompilation": "yes", + "Author": "Torsten Hothorn [aut, cre] (ORCID: ), Heidi Seibold [ctb] (ORCID: ), Achim Zeileis [aut] (ORCID: )", + "Maintainer": "Torsten Hothorn ", + "Repository": "CRAN" }, "pcaPP": { "Package": "pcaPP", "Version": "2.0-5", "Source": "Repository", - "Requirements": [ - "methods", + "VersionNote": "Released 2.0-4-1 on 2024-08-09 on CRAN", + "Title": "Robust PCA by Projection Pursuit", + "Maintainer": "Valentin Todorov ", + "Authors@R": "c(person(given = \"Peter\", family = \"Filzmoser\", role = \"aut\"), person(given = \"Heinrich\", family = \"Fritz\", role = \"aut\"), person(given = \"Klaudius\", family = \"Kalcher\", role = \"aut\"), person(given = \"Valentin\", family = \"Todorov\", role = \"cre\", email = \"valentin.todorov@chello.at\"))", + "Depends": [ + "R(>= 3.6.2)" + ], + "Imports": [ "mvtnorm", - "R" - ] + "methods" + ], + "Suggests": [ + "robustbase" + ], + "Description": "Provides functions for robust PCA by projection pursuit. The methods are described in Croux et al. (2006) , Croux et al. (2013) , Todorov and Filzmoser (2013) .", + "License": "GPL (>= 3)", + "URL": "https://github.com/valentint/pcaPP", + "BugReports": "https://github.com/valentint/pcaPP/issues", + "NeedsCompilation": "yes", + "Author": "Peter Filzmoser [aut], Heinrich Fritz [aut], Klaudius Kalcher [aut], Valentin Todorov [cre]", + "Repository": "CRAN" }, "pillar": { "Package": "pillar", "Version": "1.10.2", "Source": "Repository", - "Requirements": [ - "cli", + "Title": "Coloured Formatting for Columns", + "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Hadley\", family = \"Wickham\", role = \"aut\"), person(given = \"RStudio\", role = \"cph\"))", + "Description": "Provides 'pillar' and 'colonnade' generics designed for formatting columns of data using the full range of colours provided by modern terminals.", + "License": "MIT + file LICENSE", + "URL": "https://pillar.r-lib.org/, https://github.com/r-lib/pillar", + "BugReports": "https://github.com/r-lib/pillar/issues", + "Imports": [ + "cli (>= 2.3.0)", "glue", "lifecycle", - "rlang", - "utf8", + "rlang (>= 1.0.2)", + "utf8 (>= 1.1.0)", "utils", - "vctrs" - ] + "vctrs (>= 0.5.0)" + ], + "Suggests": [ + "bit64", + "DBI", + "debugme", + "DiagrammeR", + "dplyr", + "formattable", + "ggplot2", + "knitr", + "lubridate", + "nanotime", + "nycflights13", + "palmerpenguins", + "rmarkdown", + "scales", + "stringi", + "survival", + "testthat (>= 3.1.1)", + "tibble", + "units (>= 0.7.2)", + "vdiffr", + "withr" + ], + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2.9000", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", + "Config/testthat/start-first": "format_multi_fuzz, format_multi_fuzz_2, format_multi, ctl_colonnade, ctl_colonnade_1, ctl_colonnade_2", + "Config/autostyle/scope": "line_breaks", + "Config/autostyle/strict": "true", + "Config/gha/extra-packages": "units=?ignore-before-r=4.3.0", + "Config/Needs/website": "tidyverse/tidytemplate", + "NeedsCompilation": "no", + "Author": "Kirill Müller [aut, cre] (), Hadley Wickham [aut], RStudio [cph]", + "Maintainer": "Kirill Müller ", + "Repository": "CRAN" }, "pkgbuild": { "Package": "pkgbuild", "Version": "1.4.8", "Source": "Repository", - "Requirements": [ - "callr", - "cli", + "Title": "Find Tools Needed to Build R Packages", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Description": "Provides functions used to build R packages. Locates compilers needed to build R packages on various platforms and ensures the PATH is configured appropriately so R can use them.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/pkgbuild, https://pkgbuild.r-lib.org", + "BugReports": "https://github.com/r-lib/pkgbuild/issues", + "Depends": [ + "R (>= 3.5)" + ], + "Imports": [ + "callr (>= 3.2.0)", + "cli (>= 3.4.0)", "desc", "processx", - "R", "R6" - ] - }, - "pkgconfig": { - "Package": "pkgconfig", - "Version": "2.0.3", + ], + "Suggests": [ + "covr", + "cpp11", + "knitr", + "Rcpp", + "rmarkdown", + "testthat (>= 3.2.0)", + "withr (>= 2.3.0)" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-30", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut], Jim Hester [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" + }, + "pkgconfig": { + "Package": "pkgconfig", + "Version": "2.0.3", "Source": "Repository", - "Requirements": [ + "Title": "Private Configuration for 'R' Packages", + "Author": "Gábor Csárdi", + "Maintainer": "Gábor Csárdi ", + "Description": "Set configuration options on a per-package basis. 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This is a key part of the 'devtools' package as it allows you to rapidly iterate while developing a package.", + "License": "GPL-3", + "URL": "https://github.com/r-lib/pkgload, https://pkgload.r-lib.org", + "BugReports": "https://github.com/r-lib/pkgload/issues", + "Depends": [ + "R (>= 3.4.0)" + ], + "Imports": [ + "cli (>= 3.3.0)", + "desc", + "fs", + "glue", + "lifecycle", + "methods", + "pkgbuild", + "processx", + "rlang (>= 1.1.1)", + "rprojroot", + "utils", + "withr (>= 2.4.3)" + ], + "Suggests": [ + "bitops", + "jsonlite", + "mathjaxr", + "pak", + "Rcpp", + "remotes", + "rstudioapi", + "testthat (>= 3.2.1.1)", + "usethis" + ], + "Config/Needs/website": "tidyverse/tidytemplate, ggplot2", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "TRUE", + "Config/testthat/start-first": "dll", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut], Winston Chang [aut], Jim Hester [aut], Lionel Henry [aut, cre], Posit Software, PBC [cph, fnd], R Core team [ctb] (Some namespace and vignette code extracted from base R)", + "Maintainer": "Lionel Henry ", + "Repository": "CRAN" }, "plyr": { "Package": "plyr", "Version": "1.8.9", "Source": "Repository", - "Requirements": [ - "R", + "Title": "Tools for Splitting, Applying and Combining Data", + "Authors@R": "person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\"))", + "Description": "A set of tools that solves a common set of problems: you need to break a big problem down into manageable pieces, operate on each piece and then put all the pieces back together. For example, you might want to fit a model to each spatial location or time point in your study, summarise data by panels or collapse high-dimensional arrays to simpler summary statistics. The development of 'plyr' has been generously supported by 'Becton Dickinson'.", + "License": "MIT + file LICENSE", + "URL": "http://had.co.nz/plyr, https://github.com/hadley/plyr", + "BugReports": "https://github.com/hadley/plyr/issues", + "Depends": [ + "R (>= 3.1.0)" + ], + "Imports": [ + "Rcpp (>= 0.11.0)" + ], + "Suggests": [ + "abind", + "covr", + "doParallel", + "foreach", + "iterators", + "itertools", + "tcltk", + "testthat" + ], + "LinkingTo": [ "Rcpp" - ] + ], + "Encoding": "UTF-8", + "LazyData": "true", + "RoxygenNote": "7.2.3", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [aut, cre]", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" }, "prabclus": { "Package": "prabclus", "Version": "2.3-4", "Source": "Repository", - "Requirements": [ + "Title": "Functions for Clustering and Testing of Presence-Absence, Abundance and Multilocus Genetic Data", + "Date": "2024-09-24", + "Authors@R": "c(person(\"Christian\", \"Hennig\", role = c(\"aut\", \"cre\"), email = \"christian.hennig@unibo.it\"), person(\"Bernhard\", \"Hausdorf\", role = \"aut\", email = \"Hausdorf@zoologie.uni-hamburg.de\"))", + "Depends": [ + "R (>= 2.10)", "MASS", - "mclust", - "R" - ] + "mclust" + ], + "Suggests": [ + "spdep", + "spatialreg", + "bootstrap", + "foreign", + "mvtnorm" + ], + "Description": "Distance-based parametric bootstrap tests for clustering with spatial neighborhood information. Some distance measures, Clustering of presence-absence, abundance and multilocus genetic data for species delimitation, nearest neighbor based noise detection. Genetic distances between communities. Tests whether various distance-based regressions are equal. 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A replacement for the 'zip' function, that does not require any additional external tools on any platform.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/zip, https://r-lib.github.io/zip/", + "BugReports": "https://github.com/r-lib/zip/issues", + "Suggests": [ + "covr", + "pillar", + "processx", + "R6", + "testthat", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-05-07", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2.9000", + "NeedsCompilation": "yes", + "Author": "Gábor Csárdi [aut, cre], Kuba Podgórski [ctb], Rich Geldreich [ctb], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Gábor Csárdi ", + "Repository": "https://packagemanager.posit.co/cran/latest" } } }