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Commit 0734f1b

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Change default pango source to Viridian
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sc2ts/utils.py

Lines changed: 1 addition & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -319,8 +319,7 @@ def max_descendant_samples(ts, show_progress=True):
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class TreeInfo:
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def __init__(self, ts, show_progress=True, pango_source="Nextclade_pango"):
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# Can current set pango_source to "Nextclade_pango" or "GISAID_lineage"
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def __init__(self, ts, show_progress=True, pango_source="Viridian_pangolin"):
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self.ts = ts
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self.pango_source = pango_source
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self.strain_map = {}

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