Pin tsinfer to 0.3

See #201

Author: jeromekelleher

pyproject.toml

@@ -8,11 +8,10 @@ authors = [
 ]
 requires-python = ">=3.9"
 dependencies = [
-  "tsinfer",
+  "tsinfer==0.3", # https://github.com/jeromekelleher/sc2ts/issues/201
   "pyfaidx",
   "tskit>=0.5.3",
   "tszip",
-  "tsinfer>=0.3.0",
   "pandas",
   "numba",
   "tqdm",

tests/test_inference.py

@@ -159,7 +159,6 @@ def test_two_samples_one_mutation_one_filtered(self):
         assert var.alleles[var.genotypes[0]] == "X"
 
 
-@pytest.mark.skip("match_tsinfer broken")
 class TestMatchTsinfer:
     def match_tsinfer(self, samples, ts, haplotypes, **kwargs):
         assert len(samples) == len(haplotypes)