diff --git a/go.mod b/go.mod
index 4cd96901ad5..278aebf6b58 100644
--- a/go.mod
+++ b/go.mod
@@ -18,7 +18,7 @@ require (
 	github.com/integrii/flaggy v1.4.0
 	github.com/jesseduffield/generics v0.0.0-20250517122708-b0b4a53a6f5c
 	github.com/jesseduffield/go-git/v5 v5.14.1-0.20250407170251-e1a013310ccd
-	github.com/jesseduffield/gocui v0.3.1-0.20251214132308-02ab34c1c624
+	github.com/jesseduffield/gocui v0.3.1-0.20251223143206-950739ccd44a
 	github.com/jesseduffield/lazycore v0.0.0-20221012050358-03d2e40243c5
 	github.com/kardianos/osext v0.0.0-20190222173326-2bc1f35cddc0
 	github.com/karimkhaleel/jsonschema v0.0.0-20231001195015-d933f0d94ea3
diff --git a/go.sum b/go.sum
index 70fbbbe6ffd..5ef0c6593c0 100644
--- a/go.sum
+++ b/go.sum
@@ -194,8 +194,8 @@ github.com/jesseduffield/generics v0.0.0-20250517122708-b0b4a53a6f5c h1:tC2Paiis
 github.com/jesseduffield/generics v0.0.0-20250517122708-b0b4a53a6f5c/go.mod h1:F2fEBk0ddf6ixrBrJjY7phfQ3hL9rXG0uSjvwYe50bE=
 github.com/jesseduffield/go-git/v5 v5.14.1-0.20250407170251-e1a013310ccd h1:ViKj6qth8FgcIWizn9KiACWwPemWSymx62OPN0tHT+Q=
 github.com/jesseduffield/go-git/v5 v5.14.1-0.20250407170251-e1a013310ccd/go.mod h1:lRhCiBr6XjQrvcQVa+UYsy/99d3wMXn/a0nSQlhnhlA=
-github.com/jesseduffield/gocui v0.3.1-0.20251214132308-02ab34c1c624 h1:30mIX4f52zrO4fWfZQKHJG29t2apcSOtR/sbd3BNsVE=
-github.com/jesseduffield/gocui v0.3.1-0.20251214132308-02ab34c1c624/go.mod h1:sLIyZ2J42R6idGdtemZzsiR3xY5EF0KsvYEGh3dQv3s=
+github.com/jesseduffield/gocui v0.3.1-0.20251223143206-950739ccd44a h1:XRsyqrSljes4TlaPczQViIAA4xqdnB0fKEEpZdqWWTA=
+github.com/jesseduffield/gocui v0.3.1-0.20251223143206-950739ccd44a/go.mod h1:sLIyZ2J42R6idGdtemZzsiR3xY5EF0KsvYEGh3dQv3s=
 github.com/jesseduffield/lazycore v0.0.0-20221012050358-03d2e40243c5 h1:CDuQmfOjAtb1Gms6a1p5L2P8RhbLUq5t8aL7PiQd2uY=
 github.com/jesseduffield/lazycore v0.0.0-20221012050358-03d2e40243c5/go.mod h1:qxN4mHOAyeIDLP7IK7defgPClM/z1Kze8VVQiaEjzsQ=
 github.com/josharian/intern v1.0.0/go.mod h1:5DoeVV0s6jJacbCEi61lwdGj/aVlrQvzHFFd8Hwg//Y=
diff --git a/pkg/gui/context/list_context_trait.go b/pkg/gui/context/list_context_trait.go
index cc1d402c067..2ea58360bfd 100644
--- a/pkg/gui/context/list_context_trait.go
+++ b/pkg/gui/context/list_context_trait.go
@@ -25,8 +25,8 @@ type ListContextTrait struct {
 
 func (self *ListContextTrait) IsListContext() {}
 
-func (self *ListContextTrait) FocusLine() {
-	self.Context.FocusLine()
+func (self *ListContextTrait) FocusLine(scrollIntoView bool) {
+	self.Context.FocusLine(scrollIntoView)
 
 	// Doing this at the end of the layout function because we need the view to be
 	// resized before we focus the line, otherwise if we're in accordion mode
@@ -36,7 +36,7 @@ func (self *ListContextTrait) FocusLine() {
 		oldOrigin, _ := self.GetViewTrait().ViewPortYBounds()
 
 		self.GetViewTrait().FocusPoint(
-			self.ModelIndexToViewIndex(self.list.GetSelectedLineIdx()))
+			self.ModelIndexToViewIndex(self.list.GetSelectedLineIdx()), scrollIntoView)
 
 		selectRangeIndex, isSelectingRange := self.list.GetRangeStartIdx()
 		if isSelectingRange {
@@ -75,7 +75,7 @@ func formatListFooter(selectedLineIdx int, length int) string {
 }
 
 func (self *ListContextTrait) HandleFocus(opts types.OnFocusOpts) {
-	self.FocusLine()
+	self.FocusLine(opts.ScrollSelectionIntoView)
 
 	self.GetViewTrait().SetHighlight(self.list.Len() > 0)
 
diff --git a/pkg/gui/context/simple_context.go b/pkg/gui/context/simple_context.go
index a5b051b9349..f51d3dc5c99 100644
--- a/pkg/gui/context/simple_context.go
+++ b/pkg/gui/context/simple_context.go
@@ -54,7 +54,7 @@ func (self *SimpleContext) HandleFocusLost(opts types.OnFocusLostOpts) {
 	}
 }
 
-func (self *SimpleContext) FocusLine() {
+func (self *SimpleContext) FocusLine(scrollIntoView bool) {
 }
 
 func (self *SimpleContext) HandleRender() {
diff --git a/pkg/gui/context/view_trait.go b/pkg/gui/context/view_trait.go
index ccf7d3e9623..9a30bde6f77 100644
--- a/pkg/gui/context/view_trait.go
+++ b/pkg/gui/context/view_trait.go
@@ -17,8 +17,8 @@ func NewViewTrait(view *gocui.View) *ViewTrait {
 	return &ViewTrait{view: view}
 }
 
-func (self *ViewTrait) FocusPoint(yIdx int) {
-	self.view.FocusPoint(self.view.OriginX(), yIdx)
+func (self *ViewTrait) FocusPoint(yIdx int, scrollIntoView bool) {
+	self.view.FocusPoint(self.view.OriginX(), yIdx, scrollIntoView)
 }
 
 func (self *ViewTrait) SetRangeSelectStart(yIdx int) {
diff --git a/pkg/gui/controllers/branches_controller.go b/pkg/gui/controllers/branches_controller.go
index f430f7b0ef8..c796e19ab9e 100644
--- a/pkg/gui/controllers/branches_controller.go
+++ b/pkg/gui/controllers/branches_controller.go
@@ -531,7 +531,7 @@ func (self *BranchesController) createNewBranchWithName(newBranchName string) er
 		return err
 	}
 
-	self.context().SetSelection(0)
+	self.c.Helpers().Refs.SelectFirstBranchAndFirstCommit()
 	self.c.Refresh(types.RefreshOptions{Mode: types.ASYNC, KeepBranchSelectionIndex: true})
 	return nil
 }
diff --git a/pkg/gui/controllers/helpers/cherry_pick_helper.go b/pkg/gui/controllers/helpers/cherry_pick_helper.go
index c4be07ceb28..359d1cbc299 100644
--- a/pkg/gui/controllers/helpers/cherry_pick_helper.go
+++ b/pkg/gui/controllers/helpers/cherry_pick_helper.go
@@ -101,7 +101,7 @@ func (self *CherryPickHelper) Paste() error {
 				// below the selection.
 				if commit := self.c.Contexts().LocalCommits.GetSelected(); commit != nil && !commit.IsTODO() {
 					self.c.Contexts().LocalCommits.MoveSelection(len(cherryPickedCommits))
-					self.c.Contexts().LocalCommits.FocusLine()
+					self.c.Contexts().LocalCommits.FocusLine(true)
 				}
 
 				// If we're in the cherry-picking state at this point, it must
diff --git a/pkg/gui/controllers/helpers/refs_helper.go b/pkg/gui/controllers/helpers/refs_helper.go
index 1976bf3867d..d52d9bbad10 100644
--- a/pkg/gui/controllers/helpers/refs_helper.go
+++ b/pkg/gui/controllers/helpers/refs_helper.go
@@ -31,6 +31,15 @@ func NewRefsHelper(
 	}
 }
 
+func (self *RefsHelper) SelectFirstBranchAndFirstCommit() {
+	self.c.Contexts().Branches.SetSelection(0)
+	self.c.Contexts().ReflogCommits.SetSelection(0)
+	self.c.Contexts().LocalCommits.SetSelection(0)
+	self.c.Contexts().Branches.GetView().SetOriginY(0)
+	self.c.Contexts().ReflogCommits.GetView().SetOriginY(0)
+	self.c.Contexts().LocalCommits.GetView().SetOriginY(0)
+}
+
 func (self *RefsHelper) CheckoutRef(ref string, options types.CheckoutRefOptions) error {
 	waitingStatus := options.WaitingStatus
 	if waitingStatus == "" {
@@ -40,9 +49,8 @@ func (self *RefsHelper) CheckoutRef(ref string, options types.CheckoutRefOptions
 	cmdOptions := git_commands.CheckoutOptions{Force: false, EnvVars: options.EnvVars}
 
 	refresh := func() {
-		self.c.Contexts().Branches.SetSelection(0)
-		self.c.Contexts().ReflogCommits.SetSelection(0)
-		self.c.Contexts().LocalCommits.SetSelection(0)
+		self.SelectFirstBranchAndFirstCommit()
+
 		// loading a heap of commits is slow so we limit them whenever doing a reset
 		self.c.Contexts().LocalCommits.SetLimitCommits(true)
 
@@ -348,8 +356,7 @@ func (self *RefsHelper) NewBranch(from string, fromFormattedName string, suggest
 			self.c.Context().Push(self.c.Contexts().Branches, types.OnFocusOpts{})
 		}
 
-		self.c.Contexts().LocalCommits.SetSelection(0)
-		self.c.Contexts().Branches.SetSelection(0)
+		self.SelectFirstBranchAndFirstCommit()
 
 		self.c.Refresh(types.RefreshOptions{Mode: types.BLOCK_UI, KeepBranchSelectionIndex: true})
 	}
@@ -504,8 +511,7 @@ func (self *RefsHelper) moveCommitsToNewBranchStackedOnCurrentBranch(newBranchNa
 		}
 	}
 
-	self.c.Contexts().LocalCommits.SetSelection(0)
-	self.c.Contexts().Branches.SetSelection(0)
+	self.SelectFirstBranchAndFirstCommit()
 
 	self.c.Refresh(types.RefreshOptions{Mode: types.BLOCK_UI, KeepBranchSelectionIndex: true})
 	return nil
@@ -543,8 +549,7 @@ func (self *RefsHelper) moveCommitsToNewBranchOffOfMainBranch(newBranchName stri
 		}
 	}
 
-	self.c.Contexts().LocalCommits.SetSelection(0)
-	self.c.Contexts().Branches.SetSelection(0)
+	self.SelectFirstBranchAndFirstCommit()
 
 	self.c.Refresh(types.RefreshOptions{Mode: types.BLOCK_UI, KeepBranchSelectionIndex: true})
 	return nil
diff --git a/pkg/gui/controllers/list_controller.go b/pkg/gui/controllers/list_controller.go
index f772fb3d8c5..a9107439269 100644
--- a/pkg/gui/controllers/list_controller.go
+++ b/pkg/gui/controllers/list_controller.go
@@ -116,7 +116,12 @@ func (self *ListController) handleLineChangeAux(f func(int), change int) error {
 	}
 
 	if cursorMoved || rangeBefore != rangeAfter {
-		self.context.HandleFocus(types.OnFocusOpts{})
+		self.context.HandleFocus(types.OnFocusOpts{ScrollSelectionIntoView: true})
+	} else {
+		// If the selection did not change (because, for example, we are at the top of the list and
+		// press up), we still want to ensure that the selection is visible. This is useful after
+		// scrolling the selection out of view with the mouse.
+		self.context.FocusLine(true)
 	}
 
 	return nil
@@ -173,6 +178,8 @@ func (self *ListController) handlePageChange(delta int) error {
 		}
 	}
 
+	// Since we are maintaining the scroll position ourselves above, there's no point in passing
+	// ScrollSelectionIntoView=true here.
 	self.context.HandleFocus(types.OnFocusOpts{})
 
 	return nil
diff --git a/pkg/gui/controllers/local_commits_controller.go b/pkg/gui/controllers/local_commits_controller.go
index 5b76fd700e7..1091b91782f 100644
--- a/pkg/gui/controllers/local_commits_controller.go
+++ b/pkg/gui/controllers/local_commits_controller.go
@@ -869,7 +869,7 @@ func (self *LocalCommitsController) revert(commits []*models.Commit, start, end
 					return err
 				}
 				self.context().MoveSelection(len(commits))
-				self.context().HandleFocus(types.OnFocusOpts{})
+				self.context().HandleFocus(types.OnFocusOpts{ScrollSelectionIntoView: true})
 
 				if mustStash {
 					if err := self.c.Git().Stash.Pop(0); err != nil {
diff --git a/pkg/gui/controllers/remotes_controller.go b/pkg/gui/controllers/remotes_controller.go
index bd88b1d583f..e1f08bc7d0b 100644
--- a/pkg/gui/controllers/remotes_controller.go
+++ b/pkg/gui/controllers/remotes_controller.go
@@ -368,7 +368,7 @@ func (self *RemotesController) fetchAndCheckout(remote *models.Remote, branchNam
 			err = self.c.Git().Branch.New(branchName, remote.Name+"/"+branchName)
 			if err == nil {
 				self.c.Context().Push(self.c.Contexts().Branches, types.OnFocusOpts{})
-				self.c.Contexts().Branches.SetSelection(0)
+				self.c.Helpers().Refs.SelectFirstBranchAndFirstCommit()
 				refreshOptions.KeepBranchSelectionIndex = true
 			}
 		}
diff --git a/pkg/gui/controllers/stash_controller.go b/pkg/gui/controllers/stash_controller.go
index 87f84d7ea6c..7027cd5fec1 100644
--- a/pkg/gui/controllers/stash_controller.go
+++ b/pkg/gui/controllers/stash_controller.go
@@ -205,7 +205,7 @@ func (self *StashController) handleRenameStashEntry(stashEntry *models.StashEntr
 				return err
 			}
 			self.context().SetSelection(0) // Select the renamed stash
-			self.context().FocusLine()
+			self.context().FocusLine(true)
 			self.c.Refresh(types.RefreshOptions{Scope: []types.RefreshableView{types.STASH}})
 			return nil
 		},
diff --git a/pkg/gui/types/context.go b/pkg/gui/types/context.go
index 917342776e3..339cf2b492a 100644
--- a/pkg/gui/types/context.go
+++ b/pkg/gui/types/context.go
@@ -109,7 +109,7 @@ type Context interface {
 
 	HandleFocus(opts OnFocusOpts)
 	HandleFocusLost(opts OnFocusLostOpts)
-	FocusLine()
+	FocusLine(scrollIntoView bool)
 	HandleRender()
 	HandleRenderToMain()
 }
@@ -201,7 +201,7 @@ type IPatchExplorerContext interface {
 }
 
 type IViewTrait interface {
-	FocusPoint(yIdx int)
+	FocusPoint(yIdx int, scrollIntoView bool)
 	SetRangeSelectStart(yIdx int)
 	CancelRangeSelect()
 	SetViewPortContent(content string)
@@ -221,8 +221,9 @@ type IViewTrait interface {
 }
 
 type OnFocusOpts struct {
-	ClickedWindowName  string
-	ClickedViewLineIdx int
+	ClickedWindowName       string
+	ClickedViewLineIdx      int
+	ScrollSelectionIntoView bool
 }
 
 type OnFocusLostOpts struct {
diff --git a/pkg/gui/view_helpers.go b/pkg/gui/view_helpers.go
index 3dfea4c399c..b8ea49c4488 100644
--- a/pkg/gui/view_helpers.go
+++ b/pkg/gui/view_helpers.go
@@ -140,7 +140,7 @@ func (gui *Gui) postRefreshUpdate(c types.Context) {
 		// non-focused views to ensure that an inactive selection is painted
 		// correctly, and that integration tests see the up to date selection
 		// state.
-		c.FocusLine()
+		c.FocusLine(false)
 
 		currentCtx := gui.State.ContextMgr.Current()
 		if currentCtx.GetKey() == context.NORMAL_MAIN_CONTEXT_KEY || currentCtx.GetKey() == context.NORMAL_SECONDARY_CONTEXT_KEY {
diff --git a/pkg/integration/clients/tui.go b/pkg/integration/clients/tui.go
index 992f107e877..13b03726e4a 100644
--- a/pkg/integration/clients/tui.go
+++ b/pkg/integration/clients/tui.go
@@ -51,7 +51,7 @@ func RunTUI(raceDetector bool) {
 		if err != nil {
 			return err
 		}
-		listView.FocusPoint(0, app.itemIdx)
+		listView.FocusPoint(0, app.itemIdx, true)
 		return nil
 	}); err != nil {
 		log.Panicln(err)
@@ -66,7 +66,7 @@ func RunTUI(raceDetector bool) {
 		if err != nil {
 			return err
 		}
-		listView.FocusPoint(0, app.itemIdx)
+		listView.FocusPoint(0, app.itemIdx, true)
 		return nil
 	}); err != nil {
 		log.Panicln(err)
diff --git a/vendor/github.com/jesseduffield/gocui/view.go b/vendor/github.com/jesseduffield/gocui/view.go
index 70cbd9735e4..87f61eebd31 100644
--- a/vendor/github.com/jesseduffield/gocui/view.go
+++ b/vendor/github.com/jesseduffield/gocui/view.go
@@ -262,7 +262,7 @@ func (v *View) SelectSearchResult(index int) error {
 
 	y := v.searcher.searchPositions[index].Y
 
-	v.FocusPoint(v.ox, y)
+	v.FocusPoint(v.ox, y, true)
 	if v.searcher.onSelectItem != nil {
 		return v.searcher.onSelectItem(y, index, itemCount)
 	}
@@ -325,14 +325,17 @@ func (v *View) IsSearching() bool {
 	return v.searcher.searchString != ""
 }
 
-func (v *View) FocusPoint(cx int, cy int) {
+func (v *View) FocusPoint(cx int, cy int, scrollIntoView bool) {
 	lineCount := len(v.lines)
 	if cy < 0 || cy > lineCount {
 		return
 	}
-	height := v.InnerHeight()
 
-	v.oy = calculateNewOrigin(cy, v.oy, lineCount, height)
+	if scrollIntoView {
+		height := v.InnerHeight()
+		v.oy = calculateNewOrigin(cy, v.oy, lineCount, height)
+	}
+
 	v.cx = cx
 	v.cy = cy - v.oy
 }
diff --git a/vendor/modules.txt b/vendor/modules.txt
index eaf7b8c7c1c..49ff6fe7ae0 100644
--- a/vendor/modules.txt
+++ b/vendor/modules.txt
@@ -221,7 +221,7 @@ github.com/jesseduffield/go-git/v5/utils/merkletrie/internal/frame
 github.com/jesseduffield/go-git/v5/utils/merkletrie/noder
 github.com/jesseduffield/go-git/v5/utils/sync
 github.com/jesseduffield/go-git/v5/utils/trace
-# github.com/jesseduffield/gocui v0.3.1-0.20251214132308-02ab34c1c624
+# github.com/jesseduffield/gocui v0.3.1-0.20251223143206-950739ccd44a
 ## explicit; go 1.12
 github.com/jesseduffield/gocui
 # github.com/jesseduffield/lazycore v0.0.0-20221012050358-03d2e40243c5