diff --git a/README.md b/README.md
index 1a1f4693b..9a8747a87 100644
--- a/README.md
+++ b/README.md
@@ -19,6 +19,7 @@
     -   [Setting JFrog CLI Version](#setting-jfrog-cli-version)
     -   [Setting the JFrog Project Key](#setting-the-jfrog-project-key)
     -   [Downloading JFrog CLI from Artifactory](#downloading-jfrog-cli-from-artifactory)
+    -   [Custom Server ID and Multi-Configuration](#custom-server-id-and-multi-configuration)
 -   [JFrog Job Summary](#jfrog-job-summary)
 -   [Code Scanning Alerts](#code-scanning-alerts)
 -   [Example Projects](#example-projects)
@@ -301,6 +302,26 @@ Here's how you do this:
     ```
 </details>
 
+<details>
+    <summary>Custom Server ID and Multi-Configuration</summary>
+
+### Custom Server ID and Multi-Configuration
+
+The action configures JFrog CLI with a default server ID, which is unique for each run of a workflow.
+
+You may override the default server ID by providing a custom server ID:
+
+ ```yml
+ - uses: jfrog/setup-jfrog-cli@v4
+   with:
+       custom-server-id: my-server
+ ```
+
+You may also use multiple configurations in the same workflow by providing a custom server ID for each configuration.
+
+Alternating between configurations can be done by providing the `--server-id` option to JFrog CLI commands or by setting a default server using  `jf c use <server-id>`.
+</details>
+
 ## JFrog Job Summary
 
 Workflows using this GitHub action will output a summary of some of the key commands that were performed using JFrog CLI.
diff --git a/action.yml b/action.yml
index 1a9a88d9e..393cc15b3 100644
--- a/action.yml
+++ b/action.yml
@@ -23,6 +23,9 @@ inputs:
         description: "By default, if the workflow completes with collected build-info that has not been published using the jf rt build-publish command, the build-info will be automatically published to Artifactory. Set this to true to disable the automatic publication of build-info at the end of the workflow."
         default: "false"
         required: false
+    custom-server-id:
+        description: "Custom JFrog CLI configuration server ID to use instead of the default one generated by the action."
+        required: false
 outputs:
     oidc-token:
         description: "JFrog OIDC token generated by the Setup JFrog CLI when setting oidc-provider-name."
diff --git a/lib/cleanup.js b/lib/cleanup.js
index 06492779d..9d11dc0df 100644
--- a/lib/cleanup.js
+++ b/lib/cleanup.js
@@ -36,8 +36,7 @@ const core = __importStar(require("@actions/core"));
 const utils_1 = require("./utils");
 function cleanup() {
     return __awaiter(this, void 0, void 0, function* () {
-        if (!utils_1.Utils.loadFromCache(core.getInput(utils_1.Utils.CLI_VERSION_ARG))) {
-            core.warning('Could not find JFrog CLI executable. Skipping cleanup.');
+        if (yield shouldSkipCleanup()) {
             return;
         }
         // Run post tasks related to Build Info (auto build publish, job summary)
@@ -198,4 +197,19 @@ function generateJobSummary() {
         }
     });
 }
+function shouldSkipCleanup() {
+    return __awaiter(this, void 0, void 0, function* () {
+        if (!utils_1.Utils.loadFromCache(core.getInput(utils_1.Utils.CLI_VERSION_ARG))) {
+            core.warning('Could not find JFrog CLI executable. Skipping cleanup.');
+            return true;
+        }
+        // Skip cleanup if no servers are configured (already removed)
+        const servers = process.env[utils_1.Utils.JFROG_CLI_SERVER_IDS_ENV_VAR];
+        if (!servers) {
+            core.debug('No servers are configured. Skipping cleanup.');
+            return true;
+        }
+        return false;
+    });
+}
 cleanup();
diff --git a/lib/utils.js b/lib/utils.js
index 0fe8d85e0..efd3ab424 100644
--- a/lib/utils.js
+++ b/lib/utils.js
@@ -311,7 +311,7 @@ class Utils {
         let password = jfrogCredentials.password;
         let accessToken = jfrogCredentials.accessToken;
         if (url) {
-            let configCmd = [Utils.SETUP_JFROG_CLI_SERVER_ID, '--url', url, '--interactive=false', '--overwrite=true'];
+            let configCmd = [Utils.getServerIdForConfig(), '--url', url, '--interactive=false', '--overwrite=true'];
             if (accessToken) {
                 configCmd.push('--access-token', accessToken);
             }
@@ -321,6 +321,36 @@ class Utils {
             return configCmd;
         }
     }
+    /**
+     * Get server ID for JFrog CLI configuration. Save the server ID in the servers env var if it doesn't already exist.
+     */
+    static getServerIdForConfig() {
+        let serverId = Utils.getCustomOrDefaultServerId();
+        // Add new serverId to the servers env var if it doesn't already exist.
+        if (Utils.getConfiguredJFrogServers().includes(serverId)) {
+            return serverId;
+        }
+        const currentValue = process.env[Utils.JFROG_CLI_SERVER_IDS_ENV_VAR];
+        const newVal = currentValue ? `${currentValue};${serverId}` : serverId;
+        core.exportVariable(Utils.JFROG_CLI_SERVER_IDS_ENV_VAR, newVal);
+        return serverId;
+    }
+    /**
+     * Return custom server ID if provided, or default server ID otherwise.
+     */
+    static getCustomOrDefaultServerId() {
+        let customServerId = core.getInput(Utils.CUSTOM_SERVER_ID);
+        if (customServerId) {
+            return customServerId;
+        }
+        return Utils.getRunDefaultServerId();
+    }
+    /**
+     * Return a server ID that is unique for this workflow run based on the GitHub repository and run ID.
+     */
+    static getRunDefaultServerId() {
+        return [Utils.SETUP_JFROG_CLI_SERVER_ID_PREFIX, process.env.GITHUB_REPOSITORY, process.env.GITHUB_RUN_ID].join('-');
+    }
     static setCliEnv() {
         Utils.exportVariableIfNotSet('JFROG_CLI_ENV_EXCLUDE', '*password*;*secret*;*key*;*token*;*auth*;JF_ARTIFACTORY_*;JF_ENV_*;JF_URL;JF_USER;JF_PASSWORD;JF_ACCESS_TOKEN');
         Utils.exportVariableIfNotSet('JFROG_CLI_OFFER_CONFIG', 'false');
@@ -372,11 +402,28 @@ class Utils {
             }
         });
     }
+    /**
+     * Removed configured JFrog CLI servers that are saved in the servers env var, and unset the env var.
+     */
     static removeJFrogServers() {
         return __awaiter(this, void 0, void 0, function* () {
-            yield Utils.runCli(['c', 'rm', '--quiet']);
+            for (const serverId of Utils.getConfiguredJFrogServers()) {
+                core.debug(`Removing server ID: '${serverId}'...`);
+                yield Utils.runCli(['c', 'rm', serverId, '--quiet']);
+            }
+            core.exportVariable(Utils.JFROG_CLI_SERVER_IDS_ENV_VAR, '');
         });
     }
+    /**
+     * Split and return the configured JFrog CLI servers that are saved in the servers env var.
+     */
+    static getConfiguredJFrogServers() {
+        const serversValue = process.env[Utils.JFROG_CLI_SERVER_IDS_ENV_VAR];
+        if (!serversValue) {
+            return [];
+        }
+        return serversValue.split(';');
+    }
     static getArchitecture() {
         if (Utils.isWindows()) {
             return 'windows-amd64';
@@ -722,8 +769,10 @@ Utils.LATEST_CLI_VERSION = 'latest';
 Utils.LATEST_RELEASE_VERSION = '[RELEASE]';
 // Placeholder CLI version to use to keep 'latest' in cache.
 Utils.LATEST_SEMVER = '100.100.100';
-// The default server id name for separate env config
-Utils.SETUP_JFROG_CLI_SERVER_ID = 'setup-jfrog-cli-server';
+// The prefix for the default server id name for JFrog CLI config
+Utils.SETUP_JFROG_CLI_SERVER_ID_PREFIX = 'setup-jfrog-cli-server';
+// Environment variable to hold all configured server IDs, separated by ';'
+Utils.JFROG_CLI_SERVER_IDS_ENV_VAR = 'SETUP_JFROG_CLI_SERVER_IDS';
 // Directory name which holds markdown files for the Workflow summary
 Utils.JOB_SUMMARY_DIR_NAME = 'jfrog-command-summary';
 // Directory name which holds security command summary files
@@ -749,6 +798,8 @@ Utils.OIDC_INTEGRATION_PROVIDER_NAME = 'oidc-provider-name';
 Utils.JOB_SUMMARY_DISABLE = 'disable-job-summary';
 // Disable auto build info publish feature flag
 Utils.AUTO_BUILD_PUBLISH_DISABLE = 'disable-auto-build-publish';
+// Custom server ID input
+Utils.CUSTOM_SERVER_ID = 'custom-server-id';
 // URL for the markdown header image
 // This is hosted statically because its usage is outside the context of the JFrog setup action.
 // It cannot be linked to the repository, as GitHub serves the image from a CDN,
diff --git a/src/cleanup.ts b/src/cleanup.ts
index 9c1ac8f5a..281e7f4d3 100644
--- a/src/cleanup.ts
+++ b/src/cleanup.ts
@@ -2,10 +2,10 @@ import * as core from '@actions/core';
 import { Utils } from './utils';
 
 async function cleanup() {
-    if (!Utils.loadFromCache(core.getInput(Utils.CLI_VERSION_ARG))) {
-        core.warning('Could not find JFrog CLI executable. Skipping cleanup.');
+    if (await shouldSkipCleanup()) {
         return;
     }
+
     // Run post tasks related to Build Info (auto build publish, job summary)
     await buildInfoPostTasks();
 
@@ -158,4 +158,19 @@ async function generateJobSummary() {
     }
 }
 
+async function shouldSkipCleanup(): Promise<boolean> {
+    if (!Utils.loadFromCache(core.getInput(Utils.CLI_VERSION_ARG))) {
+        core.warning('Could not find JFrog CLI executable. Skipping cleanup.');
+        return true;
+    }
+
+    // Skip cleanup if no servers are configured (already removed)
+    const servers: string | undefined = process.env[Utils.JFROG_CLI_SERVER_IDS_ENV_VAR];
+    if (!servers) {
+        core.debug('No servers are configured. Skipping cleanup.');
+        return true;
+    }
+    return false;
+}
+
 cleanup();
diff --git a/src/utils.ts b/src/utils.ts
index e4e8a4425..f9a54b77c 100644
--- a/src/utils.ts
+++ b/src/utils.ts
@@ -33,8 +33,10 @@ export class Utils {
     private static readonly LATEST_RELEASE_VERSION: string = '[RELEASE]';
     // Placeholder CLI version to use to keep 'latest' in cache.
     public static readonly LATEST_SEMVER: string = '100.100.100';
-    // The default server id name for separate env config
-    public static readonly SETUP_JFROG_CLI_SERVER_ID: string = 'setup-jfrog-cli-server';
+    // The prefix for the default server id name for JFrog CLI config
+    public static readonly SETUP_JFROG_CLI_SERVER_ID_PREFIX: string = 'setup-jfrog-cli-server';
+    // Environment variable to hold all configured server IDs, separated by ';'
+    public static readonly JFROG_CLI_SERVER_IDS_ENV_VAR: string = 'SETUP_JFROG_CLI_SERVER_IDS';
     // Directory name which holds markdown files for the Workflow summary
     private static readonly JOB_SUMMARY_DIR_NAME: string = 'jfrog-command-summary';
     // Directory name which holds security command summary files
@@ -61,6 +63,8 @@ export class Utils {
     public static readonly JOB_SUMMARY_DISABLE: string = 'disable-job-summary';
     // Disable auto build info publish feature flag
     public static readonly AUTO_BUILD_PUBLISH_DISABLE: string = 'disable-auto-build-publish';
+    // Custom server ID input
+    private static readonly CUSTOM_SERVER_ID: string = 'custom-server-id';
     // URL for the markdown header image
     // This is hosted statically because its usage is outside the context of the JFrog setup action.
     // It cannot be linked to the repository, as GitHub serves the image from a CDN,
@@ -352,7 +356,7 @@ export class Utils {
         let accessToken: string | undefined = jfrogCredentials.accessToken;
 
         if (url) {
-            let configCmd: string[] = [Utils.SETUP_JFROG_CLI_SERVER_ID, '--url', url, '--interactive=false', '--overwrite=true'];
+            let configCmd: string[] = [Utils.getServerIdForConfig(), '--url', url, '--interactive=false', '--overwrite=true'];
             if (accessToken) {
                 configCmd.push('--access-token', accessToken);
             } else if (user && password) {
@@ -362,6 +366,40 @@ export class Utils {
         }
     }
 
+    /**
+     * Get server ID for JFrog CLI configuration. Save the server ID in the servers env var if it doesn't already exist.
+     */
+    private static getServerIdForConfig(): string {
+        let serverId: string = Utils.getCustomOrDefaultServerId();
+
+        // Add new serverId to the servers env var if it doesn't already exist.
+        if (Utils.getConfiguredJFrogServers().includes(serverId)) {
+            return serverId;
+        }
+        const currentValue: string | undefined = process.env[Utils.JFROG_CLI_SERVER_IDS_ENV_VAR];
+        const newVal: string = currentValue ? `${currentValue};${serverId}` : serverId;
+        core.exportVariable(Utils.JFROG_CLI_SERVER_IDS_ENV_VAR, newVal);
+        return serverId;
+    }
+
+    /**
+     * Return custom server ID if provided, or default server ID otherwise.
+     */
+    private static getCustomOrDefaultServerId(): string {
+        let customServerId: string = core.getInput(Utils.CUSTOM_SERVER_ID);
+        if (customServerId) {
+            return customServerId;
+        }
+        return Utils.getRunDefaultServerId();
+    }
+
+    /**
+     * Return a server ID that is unique for this workflow run based on the GitHub repository and run ID.
+     */
+    static getRunDefaultServerId(): string {
+        return [Utils.SETUP_JFROG_CLI_SERVER_ID_PREFIX, process.env.GITHUB_REPOSITORY, process.env.GITHUB_RUN_ID].join('-');
+    }
+
     public static setCliEnv() {
         Utils.exportVariableIfNotSet(
             'JFROG_CLI_ENV_EXCLUDE',
@@ -424,8 +462,26 @@ export class Utils {
         }
     }
 
+    /**
+     * Removed configured JFrog CLI servers that are saved in the servers env var, and unset the env var.
+     */
     public static async removeJFrogServers() {
-        await Utils.runCli(['c', 'rm', '--quiet']);
+        for (const serverId of Utils.getConfiguredJFrogServers()) {
+            core.debug(`Removing server ID: '${serverId}'...`);
+            await Utils.runCli(['c', 'rm', serverId, '--quiet']);
+        }
+        core.exportVariable(Utils.JFROG_CLI_SERVER_IDS_ENV_VAR, '');
+    }
+
+    /**
+     * Split and return the configured JFrog CLI servers that are saved in the servers env var.
+     */
+    public static getConfiguredJFrogServers(): string[] {
+        const serversValue: string | undefined = process.env[Utils.JFROG_CLI_SERVER_IDS_ENV_VAR];
+        if (!serversValue) {
+            return [];
+        }
+        return serversValue.split(';');
     }
 
     public static getArchitecture() {
diff --git a/test/main.spec.ts b/test/main.spec.ts
index 98ae7c634..10a63b2e4 100644
--- a/test/main.spec.ts
+++ b/test/main.spec.ts
@@ -111,7 +111,7 @@ describe('Collect JFrog Credentials from env vars exceptions', () => {
     });
 });
 
-test('Get separate env config', async () => {
+function testConfigCommand(expectedServerId: string) {
     // No url
     let configCommand: string[] | undefined = Utils.getSeparateEnvConfigArgs({} as JfrogCredentials);
     expect(configCommand).toBe(undefined);
@@ -121,14 +121,14 @@ test('Get separate env config', async () => {
 
     // No credentials
     configCommand = Utils.getSeparateEnvConfigArgs(jfrogCredentials);
-    expect(configCommand).toStrictEqual([Utils.SETUP_JFROG_CLI_SERVER_ID, '--url', DEFAULT_CLI_URL, '--interactive=false', '--overwrite=true']);
+    expect(configCommand).toStrictEqual([expectedServerId, '--url', DEFAULT_CLI_URL, '--interactive=false', '--overwrite=true']);
 
     // Basic authentication
     jfrogCredentials.username = 'user';
     jfrogCredentials.password = 'password';
     configCommand = Utils.getSeparateEnvConfigArgs(jfrogCredentials);
     expect(configCommand).toStrictEqual([
-        Utils.SETUP_JFROG_CLI_SERVER_ID,
+        expectedServerId,
         '--url',
         DEFAULT_CLI_URL,
         '--interactive=false',
@@ -145,7 +145,7 @@ test('Get separate env config', async () => {
     jfrogCredentials.accessToken = 'accessToken';
     configCommand = Utils.getSeparateEnvConfigArgs(jfrogCredentials);
     expect(configCommand).toStrictEqual([
-        Utils.SETUP_JFROG_CLI_SERVER_ID,
+        expectedServerId,
         '--url',
         DEFAULT_CLI_URL,
         '--interactive=false',
@@ -153,6 +153,42 @@ test('Get separate env config', async () => {
         '--access-token',
         'accessToken',
     ]);
+}
+
+describe('JFrog CLI Configuration', () => {
+    beforeAll(() => {
+        process.env.GITHUB_REPOSITORY = 'owner/repo';
+        process.env.GITHUB_RUN_ID = '1';
+    });
+
+    afterAll(() => {
+        ['GITHUB_REPOSITORY', 'GITHUB_RUN_ID', Utils.JFROG_CLI_SERVER_IDS_ENV_VAR].forEach((envKey) => {
+            delete process.env[envKey];
+        });
+    });
+    const myCore: jest.Mocked<typeof core> = core as any;
+
+    test('Get separate env config', async () => {
+        myCore.exportVariable = jest.fn().mockImplementation((name: string, val: string) => {
+            process.env[name] = val;
+        });
+
+        // Before setting a custom server ID, expect the default server ID to be used.
+        testConfigCommand(Utils.getRunDefaultServerId());
+
+        // Expect the custom server ID to be used.
+        let customServerId: string = 'custom-server-id';
+        jest.spyOn(core, 'getInput').mockReturnValue(customServerId);
+        testConfigCommand(customServerId);
+
+        // Expect the servers env var to include both servers.
+        const servers: string[] = Utils.getConfiguredJFrogServers();
+        expect(servers).toStrictEqual([Utils.getRunDefaultServerId(), customServerId]);
+    });
+
+    test('Get default server ID', async () => {
+        expect(Utils.getRunDefaultServerId()).toStrictEqual('setup-jfrog-cli-server-owner/repo-1');
+    });
 });
 
 describe('JFrog CLI V1 URL Tests', () => {