Merge pull request #112 from jguhlin/Update-0.1.23

Prep release

Author: jguhlin

CHANGELOG.md

@@ -1,8 +1,8 @@
 ### 0.1.23 minimap2 2.28
++ Functions to set flag opts for MapOpt and IdxOpt @dwpeng
 + Fixed memory leak when not dropping mm_idx_t properly. This is done by adding in syntactic sugar in minimap2-sys @jguhlin
 
 ### 0.1.22 minimap2 2.28
-#### Changes
 + Fixed a memory segfault when re-using a thread local buffer. Not sure why it occurs, but this fix seems to solve it.
 
 ### 0.1.21 minimap2 2.28

README.md

@@ -11,7 +11,7 @@ minimap2-sys is the raw FFI bindings to minimap2. minimap2 is the more opinionat
 # How to use
 ## Requirements
 ```toml
-minimap2 = "0.1.22+minimap2.2.28"
+minimap2 = "0.1.23+minimap2.2.28"
 ```
 Also see [Features](#features)
 
@@ -274,6 +274,8 @@ See [customization](#customization) for how to use these.
 
 ## Mapping Flags (`MM_F_*`)
 
+These can be set with helper functions. Please see the docs for IdxOpt and MapOpt.
+
 | Flag Constant           | Value          | Description                                                     |
 |-------------------------|----------------|-----------------------------------------------------------------|
 | `MM_F_NO_DIAG`          | `1`            | Skip seed pairs on the same diagonal.                           |
@@ -328,6 +330,8 @@ See [customization](#customization) for how to use these.
 
 ## Indexing Flags (`MM_I_*`)
 
+These can be set with helper functions. Please see the docs for IdxOpt and MapOpt.
+
 | Flag Constant     | Value  | Description                                              |
 |-------------------|--------|----------------------------------------------------------|
 | `MM_I_HPC`        | `1`    | Use homopolymer-compressed k-mers for indexing.          |

minimap2-sys/Cargo.lock

@@ -41,7 +41,7 @@ pkg-config = "0.3"
 
 [build-dependencies.bindgen]
 optional = true
-version = "0.70"
+version = "0.71"
 default-features = false
 features = ["which-rustfmt", "runtime"]
 

minimap2-sys/Cargo.toml

@@ -5,7 +5,7 @@ Use this if you need lower-level bindings for minimap2.
 Minimap2 2.28
 
 ## Breaking Changes
-### 0.0.18
+### 0.1.18
 mm2-fast and minimap2 have diverged. At this point mm2-fast is no longer supported. Please use a previous crate version.
 
 ## Features 
@@ -20,7 +20,8 @@ mm2-fast and minimap2 have diverged. At this point mm2-fast is no longer support
 
 ## Changelog
 ### 0.1.21 minimap2.2.28
-Syntactic sugar for mm_idx_t to support Drop, Deref, and DerefMut
+* Flag functions for IdxOpt and MapOpt @dwpeng
+* Syntactic sugar for mm_idx_t to support Drop, Deref, and DerefMut
 
 ### 0.1.20 minimap2.2.28
 * Move Drop impl to -sys crate

minimap2-sys/README.md

@@ -62,6 +62,15 @@ impl Default for mm_mapopt_t {
     }
 }
 
+impl Default for mm_idxopt_t {
+    fn default() -> Self {
+        unsafe {
+            let mut opt = MaybeUninit::uninit();
+            mm_idxopt_init(opt.as_mut_ptr());
+            opt.assume_init()
+        }
+    }
+}
 
 macro_rules! add_flag_methods {
     ($ty:ty, $struct_name:ident, $(($set_name:ident, $unset_name:ident, $flag:expr)),+) => {
@@ -136,16 +145,6 @@ add_flag_methods!(
     (set_no_name, unset_no_name, MM_I_NO_NAME)
 );
 
-impl Default for mm_idxopt_t {
-    fn default() -> Self {
-        unsafe {
-            let mut opt = MaybeUninit::uninit();
-            mm_idxopt_init(opt.as_mut_ptr());
-            opt.assume_init()
-        }
-    }
-}
-
 // TODO: Add more tests!
 #[cfg(test)]
 mod tests {