Commit bcc827c
committed
Updated htscodecs module to version 1.0.
The upstream master repository for this has also now changed, from
jkbonfield/htscodecs to samtools/htscodecs. (The jkbonfield one still
exists as I use it for making PRs against the canonical copy at
samtools, but the master branch will almost certainly not be kept up
to date.)1 parent 4df5bbd commit bcc827c
2 files changed
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-2
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- .cirrus.yml+120
- .gitignore+27
- .travis.yml-19
- Makefile.am+3-3
- NEWS+40
- README.md+4-2
- configure.ac+2-2
- htscodecs/Makefile.am+28-1
- htscodecs/arith_dynamic.c+4-47
- htscodecs/fqzcomp_qual.c+2-2
- htscodecs/htscodecs.c+44
- htscodecs/htscodecs.h+55
- htscodecs/rANS_byte.h+1-1
- htscodecs/rANS_static.c+8-96
- htscodecs/rANS_static4x16pr.c+40-198
- htscodecs/rANS_word.h+7-31
- htscodecs/rle.c+34-2
- htscodecs/tokenise_name3.c+21-3
- htscodecs/utils.h+202
- htscodecs/varint.h+6-6
- javascript/arith_gen.js+1-1
- javascript/main_arith_gen.js+1-1
- javascript/main_fqzcomp.js+1-1
- javascript/main_tok3.js+1-1
- javascript/rans4x16.js+1-1
- tests/Makefile.am+4-2
- tests/arith.test+1-1
- tests/arith_dynamic_fuzz.c+32
- tests/arith_dynamic_test.c+34
- tests/fqzcomp.test+2-2
- tests/fqzcomp_qual_fuzz.c+32
- tests/fqzcomp_qual_test.c+35-1
- tests/rANS_static4x16pr_fuzz.c+33-1
- tests/rANS_static4x16pr_test.c+34
- tests/rANS_static_fuzz.c+33-1
- tests/rANS_static_test.c+35-1
- tests/rans4x16.test+1-1
- tests/rans4x8.test+1-1
- tests/tok3.test+1-1
- tests/tokenise_name3_fuzz.c+32
- tests/tokenise_name3_test.c+1-1
- tests/varint_test.c+286
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