correct versions

Author: jkobject

notebooks/scPRINT-2-repro-notebooks/batch_corr_op ft.ipynb

@@ -75,6 +75,7 @@ dependencies = [
     "gget>=0.29.1",
     "supabase>=2.15.0",
     "s3fs>=2024.10.0",
+    "colorcet>=3.1.0",
 ]
 
 [project.optional-dependencies]
@@ -94,6 +95,7 @@ dev = [
     "datamapplot>=0.4.2",
     "celltypist>=0.1.1",
     "magic-impute>=3.0.0",
+    "papermill>=2.5.0",
 ]
 
 flash = [

notebooks/scPRINT-2-repro-notebooks/batch_corr_op v1.ipynb

@@ -51,9 +51,6 @@ def add_arguments_to_parser(self, parser):
         parser.link_arguments(
             "data.n_bins", "model.n_input_bins", apply_on="instantiate"
         )
-        parser.link_arguments(
-            "data.metacell_mode", "model.use_metacell_token", apply_on="instantiate"
-        )
         parser.link_arguments("data.classes", "model.classes", apply_on="instantiate")
         parser.link_arguments(
             "data.organisms", "model.organisms", apply_on="instantiate"