mkdocs.yml

site_name: LAMMPS Backmapping Package
site_description: Time-dependent backmapping from coarse-grained to atomistic resolution
site_author: Jakub Krajniak, Zidan Zhang
site_url: https://jkrajniak.github.io/lammps-user-backmapping/
repo_url: https://github.com/jkrajniak/lammps-user-backmapping
repo_name: jkrajniak/lammps-user-backmapping

theme:
  name: material
  palette:
    - media: "(prefers-color-scheme: light)"
      scheme: default
      primary: teal
      accent: amber
      toggle:
        icon: material/brightness-7
        name: Switch to dark mode
    - media: "(prefers-color-scheme: dark)"
      scheme: slate
      primary: teal
      accent: amber
      toggle:
        icon: material/brightness-4
        name: Switch to light mode
  features:
    - content.code.copy
    - navigation.sections
    - navigation.expand
    - navigation.top
    - search.highlight
    - toc.follow

markdown_extensions:
  - admonition
  - pymdownx.details
  - pymdownx.superfences
  - pymdownx.tabbed:
      alternate_style: true
  - pymdownx.arithmatex:
      generic: true
  - tables
  - attr_list
  - def_list
  - toc:
      permalink: true

extra_javascript:
  - https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js

nav:
  - Home: index.md
  - Getting Started: getting-started.md
  - Large-scale examples: large-scale-examples.md
  - Theory: theory.md
  - Settings Reference: settings-reference.md
  - Tutorial:
      - Setting Up a New System: tutorial-new-system.md
  - LAMMPS Components:
      - fix backmap: components/fix-backmap.md
      - pair_style backmap: components/pair-backmap.md
      - Bond Styles: components/bond-styles.md
      - Angle Style: components/angle-styles.md
  - CLI Reference:
      - backmap-prep: cli/backmap-prep.md

strict: true