Collection of bgap code for RNA folding
For rudimentary documentation, consult https://bibiserv.cebitec.uni-bielefeld.de/fold-grammars/
Register janssenlab/software as additional Ubuntu Personal Package Archive (PPA):
sudo add-apt-repository ppa:janssenlab/software
sudo apt update
Install software one or multiple software packages:
- RNAshapes:
sudo apt-get install rnashapes - RNAalishapes:
sudo apt-get install rnaalishapes - pKiss:
sudo apt-get install pkiss - pAliKiss:
sudo apt-get install palikiss - KnotInFrame:
sudo apt-get install knotinframe - RapidShapes:
sudo apt-get install rapidshapes - aCMs:
sudo apt-get install acms
You can alternatively install precompiled binaries for Linux and OSX through (bio)conda:
- RNAshapes:
conda install bioconda::rnashapes - RNAalishapes:
conda install bioconda::rnaalishapes - pKiss:
conda install bioconda::pkiss - pAliKiss:
conda install bioconda::palikiss - KnotInFrame:
conda install bioconda::knotinframe - RapidShapes:
conda install bioconda::rapidshapes - aCMs:
conda install bioconda::acms(no OSX version available)
(We have not (yet) tested the bioconda linux-aarch64 builds!)