refactor: Modularize Shiny UI into dedicated files, add R and JS CI workflows, and set document language for accessibility.

Author: jm0535

.github/workflows/lint-js.yml

@@ -0,0 +1,25 @@
+name: JS Lint
+
+on:
+  push:
+    branches: [ main, master ]
+  pull_request:
+    branches: [ main, master ]
+
+jobs:
+  lint-js:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Use Node.js
+      uses: actions/setup-node@v4
+      with:
+        node-version: '20.x'
+
+    - name: Install dependencies
+      run: npm ci
+
+    - name: Run Lint
+      run: npm run lint

.github/workflows/test-r.yml

@@ -0,0 +1,45 @@
+name: R Tests
+
+on:
+  push:
+    branches: [ main, master ]
+  pull_request:
+    branches: [ main, master ]
+
+jobs:
+  test-r:
+    runs-on: ubuntu-latest
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Set up R
+      uses: r-lib/actions/setup-r@v2
+      with:
+        r-version: 'release'
+
+    - name: Install system dependencies
+      run: |
+        sudo apt-get update
+        sudo apt-get install -y libcurl4-openssl-dev libssl-dev libxml2-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev
+
+    - name: Cache R packages
+      uses: actions/cache@v3
+      with:
+        path: ${{ env.R_LIBS_USER }}
+        key: ${{ runner.os }}-r-${{ hashFiles('shiny/config/constants.R') }}
+        restore-keys: |
+          ${{ runner.os }}-r-
+
+    - name: Install dependencies
+      run: |
+        install.packages(c("shiny", "testthat", "vegan", "iNEXT", "ggplot2", "DT", "shinyjs", "waiter", "shinyFeedback", "readr", "readxl", "dplyr", "tidyr", "ape", "picante", "betapart", "rmarkdown"))
+      shell: Rscript {0}
+
+    - name: Run tests
+      run: |
+        testthat::test_dir("shiny/tests/testthat")
+      shell: Rscript {0}

package-lock.json

@@ -10,7 +10,8 @@
     "start": "electron-forge start",
     "package": "electron-forge package",
     "make": "electron-forge make",
-    "publish": "electron-forge publish"
+    "publish": "electron-forge publish",
+    "lint": "standard"
   },
   "keywords": [
     "community-ecology",
@@ -33,6 +34,7 @@
   "homepage": "https://github.com/jm0535/0rdin#readme",
   "dependencies": {
     "axios": "^1.6.0",
+    "electron-log": "^5.4.3",
     "electron-squirrel-startup": "^1.0.0"
   },
   "devDependencies": {
@@ -71,7 +73,9 @@
             "exe": "ordin.exe",
             "setupExe": "Ordin-3.0.0-Setup.exe"
           },
-          "platforms": ["win32"]
+          "platforms": [
+            "win32"
+          ]
         },
         {
           "name": "@electron-forge/maker-zip",
@@ -88,22 +92,32 @@
               "maintainer": "Ordin",
               "homepage": "https://github.com/jmoses/ordin",
               "icon": "./build/icon.png",
-              "categories": ["Science", "Education"],
+              "categories": [
+                "Science",
+                "Education"
+              ],
               "section": "science"
             }
           },
-          "platforms": ["linux"]
+          "platforms": [
+            "linux"
+          ]
         },
         {
           "name": "@electron-forge/maker-rpm",
           "config": {
             "options": {
               "homepage": "https://github.com/jmoses/ordin",
               "icon": "./build/icon.png",
-              "categories": ["Science", "Education"]
+              "categories": [
+                "Science",
+                "Education"
+              ]
             }
           },
-          "platforms": ["linux"]
+          "platforms": [
+            "linux"
+          ]
         }
       ]
     }