quarto-molstar/presentation.qmd at main · jmbuhr/quarto-molstar · GitHub

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---
title: Molstar example
format:
  revealjs:
    css: presentation.css
molstar: embed
---

## RCSB PDB


Get a protein from the RCSB PDB with:

`{{{< mol-rcsb 7sgl >}}}`

{{< mol-rcsb 7sgl >}}

## Local pdb file

Get a local pdb file with:

`{{{< mol-url ./www/7sgl.pdb >}}}`

{{< mol-url ./www/7sgl.pdb >}}

## pdb file from url

Get a pdb file from a url:

`{{{< mol-url https://files.rcsb.org/download/7sgl.pdb >}}}`

{{< mol-url https://files.rcsb.org/download/7sgl.pdb >}}

## local xyz file

Get a local xyz file with:

`{{{< mol-url ./www/example.xyz >}} }`

{{< mol-url ./www/example.xyz >}}

## local pdb and trajectory

Load a topology and a trajectory with:

`{{{< mol-traj ./www/example.pdb ./www/example.xtc >}}}`

{{< mol-traj ./www/example.pdb ./www/example.xtc >}}

## local pdb with higher resolution

`{{{< mol-url ./www/7sgl.pdb pixelScale=3 >}}}`

{{< mol-url ./www/7sgl.pdb pixelScale=3 >}}