Pandas v1.3.0 [BREAKING CHANGE]: Pandas indexing changed -> expected list, got FrozenList #141
Description
I am unable to run the package at all. At first, I thought it was my data, but even when I changed my generation methods to those indicated in the docs, I still got the same error message.
I am running a Mambaforge implementation if it means anything (Packages all installed fine?). From what I can tell, the upsetplot function plot_matrix() in plotting.py (Link Below) attempts to use pandas column/indices selection (i.e. data[column-name]) which is not designed to take a FrozenList instance, which is what data.index.names returns?
https://github.com/jnothman/UpSetPlot/blob/master/upsetplot/plotting.py#L536
What I ran:
from upsetplot import plot, generate_counts
plot(generate_counts())The Error I received:
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
d:\GitHub\Pharmacogenetics-Snakemake\workflow\scripts\04 - GRAPHS.py in <module>
----> 1 plot(generate_counts())
D:\mambaforge\envs\snakemake\lib\site-packages\upsetplot\plotting.py in plot(data, fig, **kwargs)
715 Keys are 'matrix', 'intersections', 'totals', 'shading'
716 """
--> 717 return UpSet(data, **kwargs).plot(fig)
D:\mambaforge\envs\snakemake\lib\site-packages\upsetplot\plotting.py in plot(self, fig)
669 matrix_ax = self._reorient(fig.add_subplot)(specs['matrix'],
670 sharey=shading_ax)
--> 671 self.plot_matrix(matrix_ax)
672 totals_ax = self._reorient(fig.add_subplot)(specs['totals'],
673 sharey=matrix_ax)
D:\mambaforge\envs\snakemake\lib\site-packages\upsetplot\plotting.py in plot_matrix(self, ax)
502 n_cats = data.index.nlevels
503
--> 504 idx = np.flatnonzero(data.index.to_frame()[data.index.names].values)
505 c = np.array(['lightgrey'] * len(data) * n_cats, dtype='O')
506 c[idx] = self._facecolor
D:\mambaforge\envs\snakemake\lib\site-packages\pandas\core\frame.py in __getitem__(self, key)
3443
3444 # Do we have a (boolean) 1d indexer?
-> 3445 if com.is_bool_indexer(key):
3446 return self._getitem_bool_array(key)
3447
D:\mambaforge\envs\snakemake\lib\site-packages\pandas\core\common.py in is_bool_indexer(key)
144 elif isinstance(key, list):
145 # check if np.array(key).dtype would be bool
--> 146 return len(key) > 0 and lib.is_bool_list(key)
147
148 return False
TypeError: Argument 'obj' has incorrect type (expected list, got FrozenList)