script1.py - Fully connected neural network barely beats SVM (~60% accuracy)
script2.py - Convolutional neural network with hot vector representation (~39% accuracy)
script3.py - Convolutional neural network with continuous distributed representation (TBD)
Asgari, Ehsaneddin, and Mohammad RK Mofrad. "Continuous distributed representation of biological sequences for deep proteomics and genomics." PloS one 10.11 (2015): e0141287.
Gao J, Faraggi E, Zhou Y, Ruan J, Kurgan L. BEST: improved prediction of B-cell epitopes from antigen sequences. PLoS One. 2012; 7(6):e40104