optimization od bacterial rods: update requirements with

bayesian-optimization package

Author: polinagaindrik

data/crm_fit/0001/settings.toml

@@ -19,8 +19,10 @@ growth_rate = [0.00842039, 0.0128359,  0.01364351, 0.01530663, 0.01944372, 0.013
 # growth_rate = { min=0.0, max=0.1, initial=0.05, individual=true }
 
 [parameters.potential_type.Mie]
-en = { min=0.2, max=25.0, initial=6.0}
-em = { min=0.2, max=25.0, initial=5.5}
+#en = { min=0.2, max=25.0, initial=6.0}
+en = 10.0
+#em = { min=0.2, max=25.0, initial=5.5}
+em = 1.5
 bound = 10.0
 
 [optimization]

docs/requirements.txt

@@ -4,3 +4,4 @@ sphinxcontrib-bibtex==2.6.4
 setuptools==80.9.0
 myst_parser==4.0.1
 sphinx_subfigure==0.2.4
+bayesian-optimization==3.0.0