How to run loess when there are large gaps in a chromosome?

[xiekunwhy]

Hi,

In some(or many when genome size is large) cases, loess always stop abnormally because there are some big gaps between snp markers, any tips to deal with this problem?

Best,
Kun

[jonathonthill]

Hi Kun,

I am afraid this software is not quite ready for use yet. We are still working on some bugs and testing it as thoroughly as we can. Do you have a file you could send? We could then include it in our testing.

[xiekunwhy]

Hi @jonathonthill

Here are some ed results from a common wheat bsr project, and marker density is very low, large gap can always crashing loess function.

bsr.ed.txt

Best,
Kun

[jonathonthill]

Hi Kun, Is there any way to get me the aligned files and reference? Thanks, Jonathon

…

On Jul 22, 2020, at 8:59 PM, xiekunwhy ***@***.***> wrote: Hi @jonathonthill <https://github.com/jonathonthill> Here are some ed results from a common wheat bsr project, and marker density is very low, large gap can always crashing loess function. bsr.ed.txt <https://github.com/kjohnsen/MMAPPR2/files/4963642/bsr.ed.txt> Best, Kun — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#104 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABSNKBPZ2N3CQD6TLOYNAJDR46RPTANCNFSM4PCBIT6Q>.