Merge branch '16-detecting-private-key-usage-windows-cng-apis' of https://github.com/raulgarciamsft/ql into 16-detecting-private-key-usage-windows-cng-apis

# Conflicts:
#	cpp/ql/src/experimental/campaigns/nccoe-pqc-migration/QuantumVulnerableDiscovery/WindowsCngPQCVAsymmetricKeyUsage.qll

Author: bdrodes

.github/actions/fetch-codeql/action.yml

@@ -1,14 +1,22 @@
 name: Fetch CodeQL
 description: Fetches the latest version of CodeQL
+
+inputs:
+  channel:
+    description: 'The CodeQL channel to use'
+    required: false
+    default: 'nightly'
+
 runs:
   using: composite
   steps:
     - name: Fetch CodeQL
       shell: bash
+      env:
+        GITHUB_TOKEN: ${{ github.token }}
+        CHANNEL: ${{ inputs.channel }}
       run: |
         gh extension install github/gh-codeql
-        gh codeql set-channel nightly
+        gh codeql set-channel "$CHANNEL"
         gh codeql version
         gh codeql version --format=json | jq -r .unpackedLocation >> "${GITHUB_PATH}"
-      env:
-        GITHUB_TOKEN: ${{ github.token }}

.github/labeler.yml

@@ -43,3 +43,14 @@ documentation:
 "QL-for-QL":
   - ql/**/*
   - .github/workflows/ql-for-ql*
+
+# Since these are all shared files that need to be synced, just pick _one_ copy of each.
+"DataFlow Library":
+  - "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImpl.qll"
+  - "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplCommon.qll"
+  - "java/ql/lib/semmle/code/java/dataflow/internal/tainttracking1/TaintTrackingImpl.qll"
+  - "java/ql/lib/semmle/code/java/dataflow/internal/DataFlowImplConsistency.qll"
+  - "java/ql/lib/semmle/code/java/dataflow/internal/FlowSummaryImpl.qll"
+
+"ATM":
+  - javascript/ql/experimental/adaptivethreatmodeling/**/*

.github/workflows/atm-check-query-suite.yml

@@ -0,0 +1,93 @@
+name: "ATM - Check query suite"
+
+env:
+  QUERY_PACK: javascript/ql/experimental/adaptivethreatmodeling/src
+  QUERY_SUITE: codeql-suites/javascript-atm-code-scanning.qls
+
+on:
+  pull_request:
+    paths:
+      - ".github/workflows/atm-check-query-suite.yml"
+      - "javascript/ql/experimental/adaptivethreatmodeling/**"
+  workflow_dispatch:
+
+jobs:
+  atm-check-query-suite:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Setup CodeQL
+        uses: ./.github/actions/fetch-codeql
+        with:
+          channel: release
+
+      - name: Install ATM model
+        run: |
+          set -exu
+
+          # Install dependencies of ATM query pack, i.e. the ATM model
+          codeql pack install "${QUERY_PACK}"
+
+          # Retrieve model checksum
+          model_checksum=$(codeql resolve extensions "${QUERY_PACK}/${QUERY_SUITE}" | jq -r '.models[0].checksum')
+
+          # Trust the model so that we can use it in the ATM boosted queries
+          mkdir -p "$HOME/.config/codeql"
+          echo "--insecurely-execute-ml-model-checksums ${model_checksum}" >> "$HOME/.config/codeql/config"
+
+      - name: Create test DB
+        run: |
+          DB_PATH="${RUNNER_TEMP}/db"
+          echo "DB_PATH=${DB_PATH}" >> "${GITHUB_ENV}"
+
+          codeql database create "${DB_PATH}" --source-root config/atm --language javascript 
+
+      - name: Run ATM query suite
+        run: |
+          SARIF_PATH="${RUNNER_TEMP}/sarif.json"
+          echo "SARIF_PATH=${SARIF_PATH}" >> "${GITHUB_ENV}"
+
+          codeql database analyze \
+            --format sarif-latest \
+            --output "${SARIF_PATH}" \
+            --sarif-group-rules-by-pack \
+            -vv \
+            -- \
+            "${DB_PATH}" \
+            "${QUERY_PACK}/${QUERY_SUITE}"
+
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v3
+        with:
+          name: javascript-ml-powered-queries.sarif
+          path: "${{ env.SARIF_PATH }}"
+          retention-days: 5
+
+      - name: Check results
+        run: |
+          # We should run at least the ML-powered queries in `expected_rules`.
+          expected_rules="js/ml-powered/nosql-injection js/ml-powered/path-injection js/ml-powered/sql-injection js/ml-powered/xss"
+
+          for rule in ${expected_rules}; do
+            found_rule=$(jq --arg rule "${rule}" '[.runs[0].tool.extensions[].rules | select(. != null) |
+              flatten | .[].id] | any(. == $rule)' "${SARIF_PATH}")
+            if [[ "${found_rule}" != "true" ]]; then
+              echo "Expected SARIF output to contain rule '${rule}', but found no such rule."
+              exit 1
+            else
+              echo "Found rule '${rule}'."
+            fi
+          done
+
+          # We should have at least one alert from an ML-powered query.
+          num_alerts=$(jq '[.runs[0].results[] |
+            select(.properties.score != null and (.rule.id | startswith("js/ml-powered/")))] | length' \
+            "${SARIF_PATH}")
+          if [[ "${num_alerts}" -eq 0 ]]; then
+            echo "Expected to find at least one alert from an ML-powered query but found ${num_alerts}."
+            exit 1
+          else
+            echo "Found ${num_alerts} alerts from ML-powered queries.";
+          fi

.github/workflows/atm-model-integration-tests.yml

@@ -0,0 +1,12 @@
+name: ATM Model Integration Tests
+
+on:
+  workflow_dispatch:
+
+jobs:
+  hello-world:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: foo
+        run: echo "Hello world"

.github/workflows/compile-queries.yml

@@ -0,0 +1,57 @@
+name: "Compile all queries using the latest stable CodeQL CLI"
+
+on:
+  push:
+    branches: [main] # makes sure the cache gets populated
+  pull_request:
+    branches:
+      - main
+      - "rc/*"
+
+jobs:
+  compile-queries:
+    runs-on: ubuntu-latest-xl
+
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          fetch-depth: 0
+      # calculate the merge-base with main, in a way that works both on PRs and pushes to main. 
+      - name: Calculate merge-base
+        if: ${{ github.event_name == 'pull_request' }}
+        env:
+          BASE_BRANCH: ${{ github.base_ref }}
+        run: |
+          MERGE_BASE=$(git merge-base --fork-point origin/$BASE_BRANCH)
+          echo "merge-base=$MERGE_BASE" >> $GITHUB_ENV
+      - name: Calculate merge-base - branch
+        if: ${{ github.event_name != 'pull_request' }}
+        # using github.sha instead, since we're directly on a branch, and not in a PR
+        run: |
+          MERGE_BASE=${{ github.sha }}
+          echo "merge-base=$MERGE_BASE" >> $GITHUB_ENV
+      - name: Cache CodeQL query compilation
+        uses: actions/cache@v3
+        with:
+          path: '*/ql/src/.cache'
+          # current GH HEAD first, merge-base second, generic third
+          key: codeql-stable-compile-${{ github.sha }}
+          restore-keys: |
+            codeql-stable-compile-${{ env.merge-base }}
+            codeql-stable-compile-
+      - name: Setup CodeQL
+        uses: ./.github/actions/fetch-codeql
+        with:
+          channel: 'release'
+      - name: check formatting
+        run: codeql query format */ql/{src,lib,test}/**/*.{qll,ql} --check-only
+      - name: compile queries - check-only
+        # run with --check-only if running in a PR (github.sha != main)
+        if : ${{ github.event_name == 'pull_request' }}
+        shell: bash
+        run: codeql query compile -j0 */ql/src --keep-going --warnings=error --check-only
+      - name: compile queries - full
+        # do full compile if running on main - this populates the cache
+        if : ${{ github.event_name != 'pull_request' }}
+        shell: bash
+        run: codeql query compile -j0 */ql/src --keep-going --warnings=error

.github/workflows/ruby-build.yml

@@ -96,8 +96,8 @@ jobs:
       - name: Build Query Pack
         run: |
           codeql pack create ../shared/ssa --output target/packs
+          codeql pack create ../misc/suite-helpers --output target/packs
           codeql pack create ql/lib --output target/packs
-          codeql pack install ql/src
           codeql pack create ql/src --output target/packs
           PACK_FOLDER=$(readlink -f target/packs/codeql/ruby-queries/*)
           codeql generate query-help --format=sarifv2.1.0 --output="${PACK_FOLDER}/rules.sarif" ql/src
@@ -202,7 +202,7 @@ jobs:
           echo 'name: sample-tests
           version: 0.0.0
           dependencies:
-            codeql/ruby-all: 0.0.1
+            codeql/ruby-all: "*"
           extractor: ruby
           tests: .
           ' > qlpack.yml